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The UCSC Cancer Genomics Browser: update 2011.
Sanborn JZ, Benz SC, Craft B, Szeto C, Kober KM, Meyer L, Vaske CJ, Goldman M, Smith KE, Kuhn RM, Karolchik D, Kent WJ, Stuart JM, Haussler D, Zhu J. Sanborn JZ, et al. Among authors: zhu j. Nucleic Acids Res. 2011 Jan;39(Database issue):D951-9. doi: 10.1093/nar/gkq1113. Epub 2010 Nov 8. Nucleic Acids Res. 2011. PMID: 21059681 Free PMC article.
The UCSC Cancer Genomics Browser: update 2013.
Goldman M, Craft B, Swatloski T, Ellrott K, Cline M, Diekhans M, Ma S, Wilks C, Stuart J, Haussler D, Zhu J. Goldman M, et al. Among authors: zhu j. Nucleic Acids Res. 2013 Jan;41(Database issue):D949-54. doi: 10.1093/nar/gks1008. Epub 2012 Oct 29. Nucleic Acids Res. 2013. PMID: 23109555 Free PMC article.
The UCSC Cancer Genomics Browser: update 2015.
Goldman M, Craft B, Swatloski T, Cline M, Morozova O, Diekhans M, Haussler D, Zhu J. Goldman M, et al. Among authors: zhu j. Nucleic Acids Res. 2015 Jan;43(Database issue):D812-7. doi: 10.1093/nar/gku1073. Epub 2014 Nov 11. Nucleic Acids Res. 2015. PMID: 25392408 Free PMC article.
The UCSC Cancer Genomics Browser.
Zhu J, Sanborn JZ, Benz S, Szeto C, Hsu F, Kuhn RM, Karolchik D, Archie J, Lenburg ME, Esserman LJ, Kent WJ, Haussler D, Wang T. Zhu J, et al. Nat Methods. 2009 Apr;6(4):239-40. doi: 10.1038/nmeth0409-239. Nat Methods. 2009. PMID: 19333237 Free PMC article. No abstract available.
RADIA: RNA and DNA integrated analysis for somatic mutation detection.
Radenbaugh AJ, Ma S, Ewing A, Stuart JM, Collisson EA, Zhu J, Haussler D. Radenbaugh AJ, et al. Among authors: zhu j. PLoS One. 2014 Nov 18;9(11):e111516. doi: 10.1371/journal.pone.0111516. eCollection 2014. PLoS One. 2014. PMID: 25405470 Free PMC article.
Visualizing and interpreting cancer genomics data via the Xena platform.
Goldman MJ, Craft B, Hastie M, Repečka K, McDade F, Kamath A, Banerjee A, Luo Y, Rogers D, Brooks AN, Zhu J, Haussler D. Goldman MJ, et al. Among authors: zhu j. Nat Biotechnol. 2020 Jun;38(6):675-678. doi: 10.1038/s41587-020-0546-8. Nat Biotechnol. 2020. PMID: 32444850 Free PMC article. No abstract available.
A user guide for the online exploration and visualization of PCAWG data.
Goldman MJ, Zhang J, Fonseca NA, Cortés-Ciriano I, Xiang Q, Craft B, Piñeiro-Yáñez E, O'Connor BD, Bazant W, Barrera E, Muñoz-Pomer A, Petryszak R, Füllgrabe A, Al-Shahrour F, Keays M, Haussler D, Weinstein JN, Huber W, Valencia A, Park PJ, Papatheodorou I, Zhu J, Ferretti V, Vazquez M. Goldman MJ, et al. Among authors: zhu j. Nat Commun. 2020 Jul 7;11(1):3400. doi: 10.1038/s41467-020-16785-6. Nat Commun. 2020. PMID: 32636365 Free PMC article.
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