Huang X - Search Results

1

Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation.

Bernauer J, Huang X, Sim AY, Levitt M. Bernauer J, et al. Among authors: huang x. RNA. 2011 Jun;17(6):1066-75. doi: 10.1261/rna.2543711. Epub 2011 Apr 26. RNA. 2011. PMID: 21521828 Free PMC article.

2

Markov State Models Reveal a Two-Step Mechanism of miRNA Loading into the Human Argonaute Protein: Selective Binding followed by Structural Re-arrangement.

Jiang H, Sheong FK, Zhu L, Gao X, Bernauer J, Huang X. Jiang H, et al. Among authors: huang x. PLoS Comput Biol. 2015 Jul 16;11(7):e1004404. doi: 10.1371/journal.pcbi.1004404. eCollection 2015 Jul. PLoS Comput Biol. 2015. PMID: 26181723 Free PMC article.

3

Elucidating Mechanisms of Molecular Recognition Between Human Argonaute and miRNA Using Computational Approaches.

Jiang H, Zhu L, Héliou A, Gao X, Bernauer J, Huang X. Jiang H, et al. Among authors: huang x. Methods Mol Biol. 2017;1517:251-275. doi: 10.1007/978-1-4939-6563-2_18. Methods Mol Biol. 2017. PMID: 27924488

4

Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution.

Wang D, Bushnell DA, Huang X, Westover KD, Levitt M, Kornberg RD. Wang D, et al. Among authors: huang x. Science. 2009 May 29;324(5931):1203-6. doi: 10.1126/science.1168729. Science. 2009. PMID: 19478184 Free PMC article.

5

Multiscale modeling of macromolecular biosystems.

Flores SC, Bernauer J, Shin S, Zhou R, Huang X. Flores SC, et al. Among authors: huang x. Brief Bioinform. 2012 Jul;13(4):395-405. doi: 10.1093/bib/bbr077. Epub 2012 Jan 6. Brief Bioinform. 2012. PMID: 22228511

6

RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription.

Huang X, Wang D, Weiss DR, Bushnell DA, Kornberg RD, Levitt M. Huang X, et al. Proc Natl Acad Sci U S A. 2010 Sep 7;107(36):15745-50. doi: 10.1073/pnas.1009898107. Epub 2010 Aug 23. Proc Natl Acad Sci U S A. 2010. PMID: 20798057 Free PMC article.

7

Millisecond dynamics of RNA polymerase II translocation at atomic resolution.

Silva DA, Weiss DR, Pardo Avila F, Da LT, Levitt M, Wang D, Huang X. Silva DA, et al. Among authors: huang x. Proc Natl Acad Sci U S A. 2014 May 27;111(21):7665-70. doi: 10.1073/pnas.1315751111. Epub 2014 Apr 21. Proc Natl Acad Sci U S A. 2014. PMID: 24753580 Free PMC article.

8

Initiation complex structure and promoter proofreading.

Liu X, Bushnell DA, Silva DA, Huang X, Kornberg RD. Liu X, et al. Among authors: huang x. Science. 2011 Jul 29;333(6042):633-7. doi: 10.1126/science.1206629. Science. 2011. PMID: 21798951 Free PMC article.

9

Structural insight into RNA hairpin folding intermediates.

Bowman GR, Huang X, Yao Y, Sun J, Carlsson G, Guibas LJ, Pande VS. Bowman GR, et al. Among authors: huang x. J Am Chem Soc. 2008 Jul 30;130(30):9676-8. doi: 10.1021/ja8032857. Epub 2008 Jul 1. J Am Chem Soc. 2008. PMID: 18593120 Free PMC article.

10

Hydrophobic collapse in multidomain protein folding.

Zhou R, Huang X, Margulis CJ, Berne BJ. Zhou R, et al. Among authors: huang x. Science. 2004 Sep 10;305(5690):1605-9. doi: 10.1126/science.1101176. Science. 2004. PMID: 15361621

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