Olshen AB - Search Results

1

Clonality: an R package for testing clonal relatedness of two tumors from the same patient based on their genomic profiles.

Ostrovnaya I, Seshan VE, Olshen AB, Begg CB. Ostrovnaya I, et al. Among authors: olshen ab. Bioinformatics. 2011 Jun 15;27(12):1698-9. doi: 10.1093/bioinformatics/btr267. Epub 2011 May 5. Bioinformatics. 2011. PMID: 21546399 Free PMC article.

2

A metastasis or a second independent cancer? Evaluating the clonal origin of tumors using array copy number data.

Ostrovnaya I, Olshen AB, Seshan VE, Orlow I, Albertson DG, Begg CB. Ostrovnaya I, et al. Among authors: olshen ab. Stat Med. 2010 Jul 10;29(15):1608-21. doi: 10.1002/sim.3866. Stat Med. 2010. PMID: 20205270 Free PMC article.

3

Parent-specific copy number in paired tumor-normal studies using circular binary segmentation.

Olshen AB, Bengtsson H, Neuvial P, Spellman PT, Olshen RA, Seshan VE. Olshen AB, et al. Among authors: olshen ra. Bioinformatics. 2011 Aug 1;27(15):2038-46. doi: 10.1093/bioinformatics/btr329. Epub 2011 Jun 11. Bioinformatics. 2011. PMID: 21666266 Free PMC article.

4

A classification model for distinguishing copy number variants from cancer-related alterations.

Ostrovnaya I, Nanjangud G, Olshen AB. Ostrovnaya I, et al. Among authors: olshen ab. BMC Bioinformatics. 2010 Jun 2;11:297. doi: 10.1186/1471-2105-11-297. BMC Bioinformatics. 2010. PMID: 20525196 Free PMC article.

5

Pattern discovery and cancer gene identification in integrated cancer genomic data.

Mo Q, Wang S, Seshan VE, Olshen AB, Schultz N, Sander C, Powers RS, Ladanyi M, Shen R. Mo Q, et al. Among authors: olshen ab. Proc Natl Acad Sci U S A. 2013 Mar 12;110(11):4245-50. doi: 10.1073/pnas.1208949110. Epub 2013 Feb 21. Proc Natl Acad Sci U S A. 2013. PMID: 23431203 Free PMC article.

6

Pan-cancer identification of clinically relevant genomic subtypes using outcome-weighted integrative clustering.

Arora A, Olshen AB, Seshan VE, Shen R. Arora A, et al. Among authors: olshen ab. Genome Med. 2020 Dec 3;12(1):110. doi: 10.1186/s13073-020-00804-8. Genome Med. 2020. PMID: 33272320 Free PMC article.

7

Integrative subtype discovery in glioblastoma using iCluster.

Shen R, Mo Q, Schultz N, Seshan VE, Olshen AB, Huse J, Ladanyi M, Sander C. Shen R, et al. Among authors: olshen ab. PLoS One. 2012;7(4):e35236. doi: 10.1371/journal.pone.0035236. Epub 2012 Apr 23. PLoS One. 2012. PMID: 22539962 Free PMC article.

8

Combining integrated genomics and functional genomics to dissect the biology of a cancer-associated, aberrant transcription factor, the ASPSCR1-TFE3 fusion oncoprotein.

Kobos R, Nagai M, Tsuda M, Merl MY, Saito T, Laé M, Mo Q, Olshen A, Lianoglou S, Leslie C, Ostrovnaya I, Antczak C, Djaballah H, Ladanyi M. Kobos R, et al. J Pathol. 2013 Apr;229(5):743-754. doi: 10.1002/path.4158. Epub 2013 Mar 5. J Pathol. 2013. PMID: 23288701 Free PMC article.

9

A faster circular binary segmentation algorithm for the analysis of array CGH data.

Venkatraman ES, Olshen AB. Venkatraman ES, et al. Among authors: olshen ab. Bioinformatics. 2007 Mar 15;23(6):657-63. doi: 10.1093/bioinformatics/btl646. Epub 2007 Jan 18. Bioinformatics. 2007. PMID: 17234643

10

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis.

Shen R, Olshen AB, Ladanyi M. Shen R, et al. Among authors: olshen ab. Bioinformatics. 2009 Nov 15;25(22):2906-12. doi: 10.1093/bioinformatics/btp543. Epub 2009 Sep 16. Bioinformatics. 2009. PMID: 19759197 Free PMC article.

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