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Page 1
Assessing affymetrix GeneChip microarray quality.
McCall MN, Murakami PN, Lukk M, Huber W, Irizarry RA. McCall MN, et al. Among authors: lukk m. BMC Bioinformatics. 2011 May 7;12:137. doi: 10.1186/1471-2105-12-137. BMC Bioinformatics. 2011. PMID: 21548974 Free PMC article.
Importing ArrayExpress datasets into R/Bioconductor.
Kauffmann A, Rayner TF, Parkinson H, Kapushesky M, Lukk M, Brazma A, Huber W. Kauffmann A, et al. Among authors: lukk m. Bioinformatics. 2009 Aug 15;25(16):2092-4. doi: 10.1093/bioinformatics/btp354. Epub 2009 Jun 8. Bioinformatics. 2009. PMID: 19505942 Free PMC article.
A global map of human gene expression.
Lukk M, Kapushesky M, Nikkilä J, Parkinson H, Goncalves A, Huber W, Ukkonen E, Brazma A. Lukk M, et al. Nat Biotechnol. 2010 Apr;28(4):322-4. doi: 10.1038/nbt0410-322. Nat Biotechnol. 2010. PMID: 20379172 Free PMC article. No abstract available.
MAGETabulator, a suite of tools to support the microarray data format MAGE-TAB.
Rayner TF, Rezwan FI, Lukk M, Bradley XZ, Farne A, Holloway E, Malone J, Williams E, Parkinson H. Rayner TF, et al. Among authors: lukk m. Bioinformatics. 2009 Jan 15;25(2):279-80. doi: 10.1093/bioinformatics/btn617. Epub 2008 Nov 27. Bioinformatics. 2009. PMID: 19038988 Free PMC article.
ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments.
Parkinson H, Sarkans U, Kolesnikov N, Abeygunawardena N, Burdett T, Dylag M, Emam I, Farne A, Hastings E, Holloway E, Kurbatova N, Lukk M, Malone J, Mani R, Pilicheva E, Rustici G, Sharma A, Williams E, Adamusiak T, Brandizi M, Sklyar N, Brazma A. Parkinson H, et al. Among authors: lukk m. Nucleic Acids Res. 2011 Jan;39(Database issue):D1002-4. doi: 10.1093/nar/gkq1040. Epub 2010 Nov 10. Nucleic Acids Res. 2011. PMID: 21071405 Free PMC article.
ArrayExpress--a public database of microarray experiments and gene expression profiles.
Parkinson H, Kapushesky M, Shojatalab M, Abeygunawardena N, Coulson R, Farne A, Holloway E, Kolesnykov N, Lilja P, Lukk M, Mani R, Rayner T, Sharma A, William E, Sarkans U, Brazma A. Parkinson H, et al. Among authors: lukk m. Nucleic Acids Res. 2007 Jan;35(Database issue):D747-50. doi: 10.1093/nar/gkl995. Epub 2006 Nov 28. Nucleic Acids Res. 2007. PMID: 17132828 Free PMC article.
ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression.
Parkinson H, Kapushesky M, Kolesnikov N, Rustici G, Shojatalab M, Abeygunawardena N, Berube H, Dylag M, Emam I, Farne A, Holloway E, Lukk M, Malone J, Mani R, Pilicheva E, Rayner TF, Rezwan F, Sharma A, Williams E, Bradley XZ, Adamusiak T, Brandizi M, Burdett T, Coulson R, Krestyaninova M, Kurnosov P, Maguire E, Neogi SG, Rocca-Serra P, Sansone SA, Sklyar N, Zhao M, Sarkans U, Brazma A. Parkinson H, et al. Among authors: lukk m. Nucleic Acids Res. 2009 Jan;37(Database issue):D868-72. doi: 10.1093/nar/gkn889. Epub 2008 Nov 10. Nucleic Acids Res. 2009. PMID: 19015125 Free PMC article.
34 results