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Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis.
Kurihara Y, Matsui A, Hanada K, Kawashima M, Ishida J, Morosawa T, Tanaka M, Kaminuma E, Mochizuki Y, Matsushima A, Toyoda T, Shinozaki K, Seki M. Kurihara Y, et al. Among authors: tanaka m. Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2453-8. doi: 10.1073/pnas.0808902106. Epub 2009 Jan 30. Proc Natl Acad Sci U S A. 2009. PMID: 19181858 Free PMC article.
Arabidopsis tiling array analysis to identify the stress-responsive genes.
Matsui A, Ishida J, Morosawa T, Okamoto M, Kim JM, Kurihara Y, Kawashima M, Tanaka M, To TK, Nakaminami K, Kaminuma E, Endo TA, Mochizuki Y, Kawaguchi S, Kobayashi N, Shinozaki K, Toyoda T, Seki M. Matsui A, et al. Among authors: tanaka m. Methods Mol Biol. 2010;639:141-55. doi: 10.1007/978-1-60761-702-0_8. Methods Mol Biol. 2010. PMID: 20387044
ARTADE2DB: improved statistical inferences for Arabidopsis gene functions and structure predictions by dynamic structure-based dynamic expression (DSDE) analyses.
Iida K, Kawaguchi S, Kobayashi N, Yoshida Y, Ishii M, Harada E, Hanada K, Matsui A, Okamoto M, Ishida J, Tanaka M, Morosawa T, Seki M, Toyoda T. Iida K, et al. Among authors: tanaka m. Plant Cell Physiol. 2011 Feb;52(2):254-64. doi: 10.1093/pcp/pcq202. Epub 2011 Jan 12. Plant Cell Physiol. 2011. PMID: 21227933 Free PMC article.
Arabidopsis HDA6 is required for freezing tolerance.
To TK, Nakaminami K, Kim JM, Morosawa T, Ishida J, Tanaka M, Yokoyama S, Shinozaki K, Seki M. To TK, et al. Among authors: tanaka m. Biochem Biophys Res Commun. 2011 Mar 18;406(3):414-9. doi: 10.1016/j.bbrc.2011.02.058. Epub 2011 Feb 15. Biochem Biophys Res Commun. 2011. PMID: 21329671
Surveillance of 3' Noncoding Transcripts Requires FIERY1 and XRN3 in Arabidopsis.
Kurihara Y, Schmitz RJ, Nery JR, Schultz MD, Okubo-Kurihara E, Morosawa T, Tanaka M, Toyoda T, Seki M, Ecker JR. Kurihara Y, et al. Among authors: tanaka m. G3 (Bethesda). 2012 Apr;2(4):487-98. doi: 10.1534/g3.111.001362. Epub 2012 Apr 1. G3 (Bethesda). 2012. PMID: 22540040 Free PMC article.
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