Castoe TA - Search Results

1

Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes.

Castoe TA, de Koning JA, Hall KT, Yokoyama KD, Gu W, Smith EN, Feschotte C, Uetz P, Ray DA, Dobry J, Bogden R, Mackessy SP, Bronikowski AM, Warren WC, Secor SM, Pollock DD. Castoe TA, et al. Genome Biol. 2011 Jul 28;12(7):406. doi: 10.1186/gb-2011-12-7-406. Genome Biol. 2011. PMID: 21801464 Free PMC article.

2

Signals of differential introgression in the genome of natural hybrids of Caribbean anoles.

Farleigh K, Ascanio A, Farleigh ME, Schield DR, Card DC, Leal M, Castoe TA, Jezkova T, Rodríguez-Robles JA. Farleigh K, et al. Among authors: castoe ta. Mol Ecol. 2023 Nov;32(22):6000-6017. doi: 10.1111/mec.17170. Epub 2023 Oct 20. Mol Ecol. 2023. PMID: 37861454

3

Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region.

Jiang ZJ, Castoe TA, Austin CC, Burbrink FT, Herron MD, McGuire JA, Parkinson CL, Pollock DD. Jiang ZJ, et al. Among authors: castoe ta. BMC Evol Biol. 2007 Jul 26;7:123. doi: 10.1186/1471-2148-7-123. BMC Evol Biol. 2007. PMID: 17655768 Free PMC article.

4

Adaptive evolution and functional redesign of core metabolic proteins in snakes.

Castoe TA, Jiang ZJ, Gu W, Wang ZO, Pollock DD. Castoe TA, et al. PLoS One. 2008 May 21;3(5):e2201. doi: 10.1371/journal.pone.0002201. PLoS One. 2008. PMID: 18493604 Free PMC article.

5

Identification of repeat structure in large genomes using repeat probability clouds.

Gu W, Castoe TA, Hedges DJ, Batzer MA, Pollock DD. Gu W, et al. Among authors: castoe ta. Anal Biochem. 2008 Sep 1;380(1):77-83. doi: 10.1016/j.ab.2008.05.015. Epub 2008 May 20. Anal Biochem. 2008. PMID: 18541131 Free PMC article.

6

Evidence for an ancient adaptive episode of convergent molecular evolution.

Castoe TA, de Koning AP, Kim HM, Gu W, Noonan BP, Naylor G, Jiang ZJ, Parkinson CL, Pollock DD. Castoe TA, et al. Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):8986-91. doi: 10.1073/pnas.0900233106. Epub 2009 Apr 28. Proc Natl Acad Sci U S A. 2009. PMID: 19416880 Free PMC article.

7

Dynamic nucleotide mutation gradients and control region usage in squamate reptile mitochondrial genomes.

Castoe TA, Gu W, de Koning AP, Daza JM, Jiang ZJ, Parkinson CL, Pollock DD. Castoe TA, et al. Cytogenet Genome Res. 2009;127(2-4):112-27. doi: 10.1159/000295342. Epub 2010 Mar 8. Cytogenet Genome Res. 2009. PMID: 20215734 Free PMC article.

8

Comparison of normalization methods for construction of large, multiplex amplicon pools for next-generation sequencing.

Harris JK, Sahl JW, Castoe TA, Wagner BD, Pollock DD, Spear JR. Harris JK, et al. Among authors: castoe ta. Appl Environ Microbiol. 2010 Jun;76(12):3863-8. doi: 10.1128/AEM.02585-09. Epub 2010 Apr 23. Appl Environ Microbiol. 2010. PMID: 20418443 Free PMC article.

9

Adaptive molecular convergence: Molecular evolution versus molecular phylogenetics.

Castoe TA, de Koning AP, Pollock DD. Castoe TA, et al. Commun Integr Biol. 2010 Jan;3(1):67-9. doi: 10.4161/cib.3.1.10174. Commun Integr Biol. 2010. PMID: 20539788 Free PMC article.

10

Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence.

Castoe TA, Poole AW, Gu W, Jason de Koning AP, Daza JM, Smith EN, Pollock DD. Castoe TA, et al. Mol Ecol Resour. 2010 Mar;10(2):341-7. doi: 10.1111/j.1755-0998.2009.02750.x. Epub 2009 Jul 30. Mol Ecol Resour. 2010. PMID: 21565030 Free PMC article.

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