Whiteaker JR - Search Results

1

Quantification of proteins using peptide immunoaffinity enrichment coupled with mass spectrometry.

Zhao L, Whiteaker JR, Pope ME, Kuhn E, Jackson A, Anderson NL, Pearson TW, Carr SA, Paulovich AG. Zhao L, et al. Among authors: whiteaker jr. J Vis Exp. 2011 Jul 31;(53):2812. doi: 10.3791/2812. J Vis Exp. 2011. PMID: 21841765 Free PMC article.

2

Signal maps for mass spectrometry-based comparative proteomics.

Prakash A, Mallick P, Whiteaker J, Zhang H, Paulovich A, Flory M, Lee H, Aebersold R, Schwikowski B. Prakash A, et al. Mol Cell Proteomics. 2006 Mar;5(3):423-32. doi: 10.1074/mcp.M500133-MCP200. Epub 2005 Nov 3. Mol Cell Proteomics. 2006. PMID: 16269421 Free article.

3

Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments.

Rauch A, Bellew M, Eng J, Fitzgibbon M, Holzman T, Hussey P, Igra M, Maclean B, Lin CW, Detter A, Fang R, Faca V, Gafken P, Zhang H, Whiteaker J, States D, Hanash S, Paulovich A, McIntosh MW. Rauch A, et al. J Proteome Res. 2006 Jan;5(1):112-21. doi: 10.1021/pr0503533. J Proteome Res. 2006. PMID: 16396501

4

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.

Bellew M, Coram M, Fitzgibbon M, Igra M, Randolph T, Wang P, May D, Eng J, Fang R, Lin C, Chen J, Goodlett D, Whiteaker J, Paulovich A, McIntosh M. Bellew M, et al. Bioinformatics. 2006 Aug 1;22(15):1902-9. doi: 10.1093/bioinformatics/btl276. Epub 2006 Jun 9. Bioinformatics. 2006. PMID: 16766559

5

Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles.

Piening BD, Wang P, Bangur CS, Whiteaker J, Zhang H, Feng LC, Keane JF, Eng JK, Tang H, Prakash A, McIntosh MW, Paulovich A. Piening BD, et al. J Proteome Res. 2006 Jul;5(7):1527-34. doi: 10.1021/pr050436j. J Proteome Res. 2006. PMID: 16823959

6

Normalization regarding non-random missing values in high-throughput mass spectrometry data.

Wang P, Tang H, Zhang H, Whiteaker J, Paulovich AG, Mcintosh M. Wang P, et al. Pac Symp Biocomput. 2006:315-26. Pac Symp Biocomput. 2006. PMID: 17094249 Free article.

7

Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers.

Whiteaker JR, Zhao L, Zhang HY, Feng LC, Piening BD, Anderson L, Paulovich AG. Whiteaker JR, et al. Anal Biochem. 2007 Mar 1;362(1):44-54. doi: 10.1016/j.ab.2006.12.023. Epub 2006 Dec 20. Anal Biochem. 2007. PMID: 17241609 Free PMC article.

8

Head-to-head comparison of serum fractionation techniques.

Whiteaker JR, Zhang H, Eng JK, Fang R, Piening BD, Feng LC, Lorentzen TD, Schoenherr RM, Keane JF, Holzman T, Fitzgibbon M, Lin C, Zhang H, Cooke K, Liu T, Camp DG 2nd, Anderson L, Watts J, Smith RD, McIntosh MW, Paulovich AG. Whiteaker JR, et al. J Proteome Res. 2007 Feb;6(2):828-36. doi: 10.1021/pr0604920. J Proteome Res. 2007. PMID: 17269739

9

A platform for accurate mass and time analyses of mass spectrometry data.

May D, Fitzgibbon M, Liu Y, Holzman T, Eng J, Kemp CJ, Whiteaker J, Paulovich A, McIntosh M. May D, et al. J Proteome Res. 2007 Jul;6(7):2685-94. doi: 10.1021/pr070146y. Epub 2007 Jun 9. J Proteome Res. 2007. PMID: 17559252

10

Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics.

Prakash A, Piening B, Whiteaker J, Zhang H, Shaffer SA, Martin D, Hohmann L, Cooke K, Olson JM, Hansen S, Flory MR, Lee H, Watts J, Goodlett DR, Aebersold R, Paulovich A, Schwikowski B. Prakash A, et al. Mol Cell Proteomics. 2007 Oct;6(10):1741-8. doi: 10.1074/mcp.M600470-MCP200. Epub 2007 Jul 7. Mol Cell Proteomics. 2007. PMID: 17617667 Free article.

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