Schellenberger J - Search Results

1

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0.

Schellenberger J, Que R, Fleming RM, Thiele I, Orth JD, Feist AM, Zielinski DC, Bordbar A, Lewis NE, Rahmanian S, Kang J, Hyduke DR, Palsson BØ. Schellenberger J, et al. Nat Protoc. 2011 Aug 4;6(9):1290-307. doi: 10.1038/nprot.2011.308. Nat Protoc. 2011. PMID: 21886097 Free PMC article.

2

Use of randomized sampling for analysis of metabolic networks.

Schellenberger J, Palsson BØ. Schellenberger J, et al. J Biol Chem. 2009 Feb 27;284(9):5457-61. doi: 10.1074/jbc.R800048200. Epub 2008 Oct 20. J Biol Chem. 2009. PMID: 18940807 Free article. Review.

3

Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions.

Bordbar A, Lewis NE, Schellenberger J, Palsson BØ, Jamshidi N. Bordbar A, et al. Among authors: schellenberger j. Mol Syst Biol. 2010 Oct 19;6:422. doi: 10.1038/msb.2010.68. Mol Syst Biol. 2010. PMID: 20959820 Free PMC article.

4

Elimination of thermodynamically infeasible loops in steady-state metabolic models.

Schellenberger J, Lewis NE, Palsson BØ. Schellenberger J, et al. Biophys J. 2011 Feb 2;100(3):544-553. doi: 10.1016/j.bpj.2010.12.3707. Biophys J. 2011. PMID: 21281568 Free PMC article.

5

Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli.

Feist AM, Zielinski DC, Orth JD, Schellenberger J, Herrgard MJ, Palsson BØ. Feist AM, et al. Among authors: schellenberger j. Metab Eng. 2010 May;12(3):173-86. doi: 10.1016/j.ymben.2009.10.003. Epub 2009 Oct 17. Metab Eng. 2010. PMID: 19840862 Free PMC article.

6

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions.

Schellenberger J, Park JO, Conrad TM, Palsson BØ. Schellenberger J, et al. BMC Bioinformatics. 2010 Apr 29;11:213. doi: 10.1186/1471-2105-11-213. BMC Bioinformatics. 2010. PMID: 20426874 Free PMC article.

7

Large-scale in silico modeling of metabolic interactions between cell types in the human brain.

Lewis NE, Schramm G, Bordbar A, Schellenberger J, Andersen MP, Cheng JK, Patel N, Yee A, Lewis RA, Eils R, König R, Palsson BØ. Lewis NE, et al. Among authors: schellenberger j. Nat Biotechnol. 2010 Dec;28(12):1279-85. doi: 10.1038/nbt.1711. Epub 2010 Nov 21. Nat Biotechnol. 2010. PMID: 21102456 Free PMC article.

8

Predicting outcomes of steady-state ¹³C isotope tracing experiments using Monte Carlo sampling.

Schellenberger J, Zielinski DC, Choi W, Madireddi S, Portnoy V, Scott DA, Reed JL, Osterman AL, Palsson B. Schellenberger J, et al. BMC Syst Biol. 2012 Jan 30;6:9. doi: 10.1186/1752-0509-6-9. BMC Syst Biol. 2012. PMID: 22289253 Free PMC article.

9

Minimal metabolic pathway structure is consistent with associated biomolecular interactions.

Bordbar A, Nagarajan H, Lewis NE, Latif H, Ebrahim A, Federowicz S, Schellenberger J, Palsson BO. Bordbar A, et al. Among authors: schellenberger j. Mol Syst Biol. 2014 Jul 1;10(7):737. doi: 10.15252/msb.20145243. Mol Syst Biol. 2014. PMID: 24987116 Free PMC article.

10

Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies.

Price ND, Schellenberger J, Palsson BO. Price ND, et al. Among authors: schellenberger j. Biophys J. 2004 Oct;87(4):2172-86. doi: 10.1529/biophysj.104.043000. Biophys J. 2004. PMID: 15454420 Free PMC article.

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