Thiele I - Search Results

1

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0.

Schellenberger J, Que R, Fleming RM, Thiele I, Orth JD, Feist AM, Zielinski DC, Bordbar A, Lewis NE, Rahmanian S, Kang J, Hyduke DR, Palsson BØ. Schellenberger J, et al. Among authors: thiele i. Nat Protoc. 2011 Aug 4;6(9):1290-307. doi: 10.1038/nprot.2011.308. Nat Protoc. 2011. PMID: 21886097 Free PMC article.

2

Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet.

Thiele I, Price ND, Vo TD, Palsson BØ. Thiele I, et al. J Biol Chem. 2005 Mar 25;280(12):11683-95. doi: 10.1074/jbc.M409072200. Epub 2004 Nov 30. J Biol Chem. 2005. PMID: 15572364 Free article.

3

Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants.

Thiele I, Vo TD, Price ND, Palsson BØ. Thiele I, et al. J Bacteriol. 2005 Aug;187(16):5818-30. doi: 10.1128/JB.187.16.5818-5830.2005. J Bacteriol. 2005. PMID: 16077130 Free PMC article.

4

Towards multidimensional genome annotation.

Reed JL, Famili I, Thiele I, Palsson BO. Reed JL, et al. Among authors: thiele i. Nat Rev Genet. 2006 Feb;7(2):130-41. doi: 10.1038/nrg1769. Nat Rev Genet. 2006. PMID: 16418748 Review.

5

Candidate states of Helicobacter pylori's genome-scale metabolic network upon application of "loop law" thermodynamic constraints.

Price ND, Thiele I, Palsson BØ. Price ND, et al. Among authors: thiele i. Biophys J. 2006 Jun 1;90(11):3919-28. doi: 10.1529/biophysj.105.072645. Epub 2006 Mar 13. Biophys J. 2006. PMID: 16533855 Free PMC article.

6

Global reconstruction of the human metabolic network based on genomic and bibliomic data.

Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BØ. Duarte NC, et al. Among authors: thiele i. Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1777-82. doi: 10.1073/pnas.0610772104. Epub 2007 Jan 31. Proc Natl Acad Sci U S A. 2007. PMID: 17267599 Free PMC article.

7

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory.

Nogales J, Palsson BØ, Thiele I. Nogales J, et al. Among authors: thiele i. BMC Syst Biol. 2008 Sep 16;2:79. doi: 10.1186/1752-0509-2-79. BMC Syst Biol. 2008. PMID: 18793442 Free PMC article.

8

Reconstruction of biochemical networks in microorganisms.

Feist AM, Herrgård MJ, Thiele I, Reed JL, Palsson BØ. Feist AM, et al. Among authors: thiele i. Nat Rev Microbiol. 2009 Feb;7(2):129-43. doi: 10.1038/nrmicro1949. Epub 2008 Dec 31. Nat Rev Microbiol. 2009. PMID: 19116616 Free PMC article. Review.

9

Identification of potential pathway mediation targets in Toll-like receptor signaling.

Li F, Thiele I, Jamshidi N, Palsson BØ. Li F, et al. Among authors: thiele i. PLoS Comput Biol. 2009 Feb;5(2):e1000292. doi: 10.1371/journal.pcbi.1000292. Epub 2009 Feb 20. PLoS Comput Biol. 2009. PMID: 19229310 Free PMC article.

10

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization.

Thiele I, Jamshidi N, Fleming RM, Palsson BØ. Thiele I, et al. PLoS Comput Biol. 2009 Mar;5(3):e1000312. doi: 10.1371/journal.pcbi.1000312. Epub 2009 Mar 13. PLoS Comput Biol. 2009. PMID: 19282977 Free PMC article.

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