Bonneau R - Search Results

1

The 2010 Rosetta developers meeting: macromolecular prediction and design meets reproducible publishing.

Renfrew PD, Campbell G, Strauss CE, Bonneau R. Renfrew PD, et al. Among authors: bonneau r. PLoS One. 2011;6(8):e22431. doi: 10.1371/journal.pone.0022431. Epub 2011 Aug 31. PLoS One. 2011. PMID: 21909349 Free PMC article. No abstract available.

2

Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation.

Bonneau R, Strauss CE, Baker D. Bonneau R, et al. Proteins. 2001 Apr 1;43(1):1-11. doi: 10.1002/1097-0134(20010401)43:1<1::aid-prot1012>3.0.co;2-a. Proteins. 2001. PMID: 11170209

3

Rosetta in CASP4: progress in ab initio protein structure prediction.

Bonneau R, Tsai J, Ruczinski I, Chivian D, Rohl C, Strauss CE, Baker D. Bonneau R, et al. Proteins. 2001;Suppl 5:119-26. doi: 10.1002/prot.1170. Proteins. 2001. PMID: 11835488

4

De novo prediction of three-dimensional structures for major protein families.

Bonneau R, Strauss CE, Rohl CA, Chivian D, Bradley P, Malmström L, Robertson T, Baker D. Bonneau R, et al. J Mol Biol. 2002 Sep 6;322(1):65-78. doi: 10.1016/s0022-2836(02)00698-8. J Mol Biol. 2002. PMID: 12215415

5

Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology.

Malmström L, Riffle M, Strauss CE, Chivian D, Davis TN, Bonneau R, Baker D. Malmström L, et al. Among authors: bonneau r. PLoS Biol. 2007 Apr;5(4):e76. doi: 10.1371/journal.pbio.0050076. PLoS Biol. 2007. PMID: 17373854 Free PMC article.

6

A preliminary survey of the peptoid folding landscape.

Butterfoss GL, Renfrew PD, Kuhlman B, Kirshenbaum K, Bonneau R. Butterfoss GL, et al. Among authors: bonneau r. J Am Chem Soc. 2009 Nov 25;131(46):16798-807. doi: 10.1021/ja905267k. J Am Chem Soc. 2009. PMID: 19919145

7

Peptoid atropisomers.

Paul B, Butterfoss GL, Boswell MG, Renfrew PD, Yeung FG, Shah NH, Wolf C, Bonneau R, Kirshenbaum K. Paul B, et al. Among authors: bonneau r. J Am Chem Soc. 2011 Jul 20;133(28):10910-9. doi: 10.1021/ja2028684. Epub 2011 Jun 22. J Am Chem Soc. 2011. PMID: 21634437

8

Rational design of temperature-sensitive alleles using computational structure prediction.

Poultney CS, Butterfoss GL, Gutwein MR, Drew K, Gresham D, Gunsalus KC, Shasha DE, Bonneau R. Poultney CS, et al. Among authors: bonneau r. PLoS One. 2011;6(9):e23947. doi: 10.1371/journal.pone.0023947. Epub 2011 Sep 2. PLoS One. 2011. PMID: 21912654 Free PMC article.

9

Oligo(N-alkoxy glycines): trans substantiating peptoid conformations.

Jordan PA, Paul B, Butterfoss GL, Renfrew PD, Bonneau R, Kirshenbaum K. Jordan PA, et al. Among authors: bonneau r. Biopolymers. 2011;96(5):617-26. doi: 10.1002/bip.21675. Biopolymers. 2011. PMID: 22180909

10

Incorporation of noncanonical amino acids into Rosetta and use in computational protein-peptide interface design.

Renfrew PD, Choi EJ, Bonneau R, Kuhlman B. Renfrew PD, et al. Among authors: bonneau r. PLoS One. 2012;7(3):e32637. doi: 10.1371/journal.pone.0032637. Epub 2012 Mar 14. PLoS One. 2012. PMID: 22431978 Free PMC article.

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