Gerek ZN - Search Results

1

Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning.

Gerek ZN, Ozkan SB. Gerek ZN, et al. PLoS Comput Biol. 2011 Oct;7(10):e1002154. doi: 10.1371/journal.pcbi.1002154. Epub 2011 Oct 6. PLoS Comput Biol. 2011. PMID: 21998559 Free PMC article. Review.

2

Identification of specificity and promiscuity of PDZ domain interactions through their dynamic behavior.

Gerek ZN, Keskin O, Ozkan SB. Gerek ZN, et al. Proteins. 2009 Dec;77(4):796-811. doi: 10.1002/prot.22492. Proteins. 2009. PMID: 19585657

3

A flexible docking scheme to explore the binding selectivity of PDZ domains.

Gerek ZN, Ozkan SB. Gerek ZN, et al. Protein Sci. 2010 May;19(5):914-28. doi: 10.1002/pro.366. Protein Sci. 2010. PMID: 20196074 Free PMC article.

4

Collective dynamics differentiates functional divergence in protein evolution.

Glembo TJ, Farrell DW, Gerek ZN, Thorpe MF, Ozkan SB. Glembo TJ, et al. Among authors: gerek zn. PLoS Comput Biol. 2012;8(3):e1002428. doi: 10.1371/journal.pcbi.1002428. Epub 2012 Mar 29. PLoS Comput Biol. 2012. PMID: 22479170 Free PMC article.

5

BP-Dock: a flexible docking scheme for exploring protein-ligand interactions based on unbound structures.

Bolia A, Gerek ZN, Ozkan SB. Bolia A, et al. Among authors: gerek zn. J Chem Inf Model. 2014 Mar 24;54(3):913-25. doi: 10.1021/ci4004927. Epub 2014 Mar 4. J Chem Inf Model. 2014. PMID: 24380381 Free PMC article.

6

Conformational dynamics of nonsynonymous variants at protein interfaces reveals disease association.

Butler BM, Gerek ZN, Kumar S, Ozkan SB. Butler BM, et al. Among authors: gerek zn. Proteins. 2015 Mar;83(3):428-35. doi: 10.1002/prot.24748. Epub 2015 Jan 13. Proteins. 2015. PMID: 25546381 Free PMC article.

7

Manipulation of conformational change in proteins by single-residue perturbations.

Atilgan C, Gerek ZN, Ozkan SB, Atilgan AR. Atilgan C, et al. Among authors: gerek zn. Biophys J. 2010 Aug 4;99(3):933-43. doi: 10.1016/j.bpj.2010.05.020. Biophys J. 2010. PMID: 20682272 Free PMC article.

8

The binding affinities of proteins interacting with the PDZ domain of PICK1.

Bolia A, Gerek ZN, Keskin O, Banu Ozkan S, Dev KK. Bolia A, et al. Among authors: gerek zn. Proteins. 2012 May;80(5):1393-408. doi: 10.1002/prot.24034. Epub 2012 Feb 24. Proteins. 2012. PMID: 22275068

9

Adaptive Evolution as a Predictor of Species-Specific Innate Immune Response.

Webb AE, Gerek ZN, Morgan CC, Walsh TA, Loscher CE, Edwards SV, O'Connell MJ. Webb AE, et al. Among authors: gerek zn. Mol Biol Evol. 2015 Jul;32(7):1717-29. doi: 10.1093/molbev/msv051. Epub 2015 Mar 10. Mol Biol Evol. 2015. PMID: 25758009 Free PMC article.

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