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Coupled RNA processing and transcription of intergenic primary microRNAs.
Ballarino M, Pagano F, Girardi E, Morlando M, Cacchiarelli D, Marchioni M, Proudfoot NJ, Bozzoni I. Ballarino M, et al. Among authors: cacchiarelli d. Mol Cell Biol. 2009 Oct;29(20):5632-8. doi: 10.1128/MCB.00664-09. Epub 2009 Aug 10. Mol Cell Biol. 2009. PMID: 19667074 Free PMC article.
MicroRNAs involved in molecular circuitries relevant for the Duchenne muscular dystrophy pathogenesis are controlled by the dystrophin/nNOS pathway.
Cacchiarelli D, Martone J, Girardi E, Cesana M, Incitti T, Morlando M, Nicoletti C, Santini T, Sthandier O, Barberi L, Auricchio A, Musarò A, Bozzoni I. Cacchiarelli D, et al. Cell Metab. 2010 Oct 6;12(4):341-351. doi: 10.1016/j.cmet.2010.07.008. Epub 2010 Aug 19. Cell Metab. 2010. PMID: 20727829 Free article.
miRNAs as serum biomarkers for Duchenne muscular dystrophy.
Cacchiarelli D, Legnini I, Martone J, Cazzella V, D'Amico A, Bertini E, Bozzoni I. Cacchiarelli D, et al. Among authors: d amico a. EMBO Mol Med. 2011 May;3(5):258-65. doi: 10.1002/emmm.201100133. Epub 2011 Mar 21. EMBO Mol Med. 2011. PMID: 21425469 Free PMC article.
Integrative Analyses of Human Reprogramming Reveal Dynamic Nature of Induced Pluripotency.
Cacchiarelli D, Trapnell C, Ziller MJ, Soumillon M, Cesana M, Karnik R, Donaghey J, Smith ZD, Ratanasirintrawoot S, Zhang X, Ho Sui SJ, Wu Z, Akopian V, Gifford CA, Doench J, Rinn JL, Daley GQ, Meissner A, Lander ES, Mikkelsen TS. Cacchiarelli D, et al. Cell. 2015 Jul 16;162(2):412-424. doi: 10.1016/j.cell.2015.06.016. Cell. 2015. PMID: 26186193 Free PMC article.
Transcriptional and Chromatin Dynamics of Muscle Regeneration after Severe Trauma.
Aguilar CA, Pop R, Shcherbina A, Watts A, Matheny RW Jr, Cacchiarelli D, Han WM, Shin E, Nakhai SA, Jang YC, Carrigan CT, Gifford CA, Kottke MA, Cesana M, Lee J, Urso ML, Meissner A. Aguilar CA, et al. Among authors: cacchiarelli d. Stem Cell Reports. 2016 Nov 8;7(5):983-997. doi: 10.1016/j.stemcr.2016.09.009. Epub 2016 Oct 20. Stem Cell Reports. 2016. PMID: 27773702 Free PMC article.
A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development.
Cesana M, Guo MH, Cacchiarelli D, Wahlster L, Barragan J, Doulatov S, Vo LT, Salvatori B, Trapnell C, Clement K, Cahan P, Tsanov KM, Sousa PM, Tazon-Vega B, Bolondi A, Giorgi FM, Califano A, Rinn JL, Meissner A, Hirschhorn JN, Daley GQ. Cesana M, et al. Among authors: cacchiarelli d. Cell Stem Cell. 2018 Apr 5;22(4):575-588.e7. doi: 10.1016/j.stem.2018.03.012. Cell Stem Cell. 2018. PMID: 29625070 Free PMC article.
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