Marco Sola S - Search Results

1

Fast computation and applications of genome mappability.

Derrien T, Estellé J, Marco Sola S, Knowles DG, Raineri E, Guigó R, Ribeca P. Derrien T, et al. Among authors: marco sola s. PLoS One. 2012;7(1):e30377. doi: 10.1371/journal.pone.0030377. Epub 2012 Jan 19. PLoS One. 2012. PMID: 22276185 Free PMC article.

2

The GEM mapper: fast, accurate and versatile alignment by filtration.

Marco-Sola S, Sammeth M, Guigó R, Ribeca P. Marco-Sola S, et al. Nat Methods. 2012 Dec;9(12):1185-8. doi: 10.1038/nmeth.2221. Epub 2012 Oct 28. Nat Methods. 2012. PMID: 23103880

3

Efficient Alignment of Illumina-Like High-Throughput Sequencing Reads with the GEnomic Multi-tool (GEM) Mapper.

Marco-Sola S, Ribeca P. Marco-Sola S, et al. Curr Protoc Bioinformatics. 2015 Jun 19;50:11.13.1-11.13.20. doi: 10.1002/0471250953.bi1113s50. Curr Protoc Bioinformatics. 2015. PMID: 26094690

4

ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.

Rodríguez-Martín B, Palumbo E, Marco-Sola S, Griebel T, Ribeca P, Alonso G, Rastrojo A, Aguado B, Guigó R, Djebali S. Rodríguez-Martín B, et al. Among authors: marco sola s. BMC Genomics. 2017 Jan 3;18(1):7. doi: 10.1186/s12864-016-3404-9. BMC Genomics. 2017. PMID: 28049418 Free PMC article.

5

Boosting the FM-Index on the GPU: Effective Techniques to Mitigate Random Memory Access.

Chacón A, Marco-Sola S, Espinosa A, Ribeca P, Moure JC. Chacón A, et al. Among authors: marco sola s. IEEE/ACM Trans Comput Biol Bioinform. 2015 Sep-Oct;12(5):1048-59. doi: 10.1109/TCBB.2014.2377716. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26451818

6

Fast gap-affine pairwise alignment using the wavefront algorithm.

Marco-Sola S, Moure JC, Moreto M, Espinosa A. Marco-Sola S, et al. Bioinformatics. 2021 May 1;37(4):456-463. doi: 10.1093/bioinformatics/btaa777. Bioinformatics. 2021. PMID: 32915952 Free PMC article.

7

gemBS: high throughput processing for DNA methylation data from bisulfite sequencing.

Merkel A, Fernández-Callejo M, Casals E, Marco-Sola S, Schuyler R, Gut IG, Heath SC. Merkel A, et al. Among authors: marco sola s. Bioinformatics. 2019 Mar 1;35(5):737-742. doi: 10.1093/bioinformatics/bty690. Bioinformatics. 2019. PMID: 30137223

8

From Wet-Lab to Variations: Concordance and Speed of Bioinformatics Pipelines for Whole Genome and Whole Exome Sequencing.

Laurie S, Fernandez-Callejo M, Marco-Sola S, Trotta JR, Camps J, Chacón A, Espinosa A, Gut M, Gut I, Heath S, Beltran S. Laurie S, et al. Among authors: marco sola s. Hum Mutat. 2016 Dec;37(12):1263-1271. doi: 10.1002/humu.23114. Epub 2016 Sep 26. Hum Mutat. 2016. PMID: 27604516 Free PMC article.

9

AnchorWave: Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication.

Song B, Marco-Sola S, Moreto M, Johnson L, Buckler ES, Stitzer MC. Song B, et al. Among authors: marco sola s. Proc Natl Acad Sci U S A. 2022 Jan 4;119(1):e2113075119. doi: 10.1073/pnas.2113075119. Proc Natl Acad Sci U S A. 2022. PMID: 34934012 Free PMC article.

10

Building pangenome graphs.

Garrison E, Guarracino A, Heumos S, Villani F, Bao Z, Tattini L, Hagmann J, Vorbrugg S, Marco-Sola S, Kubica C, Ashbrook DG, Thorell K, Rusholme-Pilcher RL, Liti G, Rudbeck E, Golicz AA, Nahnsen S, Yang Z, Mwaniki MN, Nobrega FL, Wu Y, Chen H, de Ligt J, Sudmant PH, Huang S, Weigel D, Soranzo N, Colonna V, Williams RW, Prins P. Garrison E, et al. Among authors: marco sola s. Nat Methods. 2024 Nov;21(11):2008-2012. doi: 10.1038/s41592-024-02430-3. Epub 2024 Oct 21. Nat Methods. 2024. PMID: 39433878

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