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Genome-wide SNP detection, validation, and development of an 8K SNP array for apple.
Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Chagné D, et al. Among authors: van de weg e. PLoS One. 2012;7(2):e31745. doi: 10.1371/journal.pone.0031745. Epub 2012 Feb 21. PLoS One. 2012. PMID: 22363718 Free PMC article.
High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow.
Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. Vanderzande S, et al. Among authors: van de weg e. PLoS One. 2019 Jun 27;14(6):e0210928. doi: 10.1371/journal.pone.0210928. eCollection 2019. PLoS One. 2019. PMID: 31246947 Free PMC article.
Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh).
Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Bianco L, et al. Among authors: van de weg e. PLoS One. 2014 Oct 10;9(10):e110377. doi: 10.1371/journal.pone.0110377. eCollection 2014. PLoS One. 2014. PMID: 25303088 Free PMC article.
Apple whole genome sequences: recent advances and new prospects.
Peace CP, Bianco L, Troggio M, van de Weg E, Howard NP, Cornille A, Durel CE, Myles S, Migicovsky Z, Schaffer RJ, Costes E, Fazio G, Yamane H, van Nocker S, Gottschalk C, Costa F, Chagné D, Zhang X, Patocchi A, Gardiner SE, Hardner C, Kumar S, Laurens F, Bucher E, Main D, Jung S, Vanderzande S. Peace CP, et al. Among authors: van de weg e, van nocker s. Hortic Res. 2019 Apr 5;6:59. doi: 10.1038/s41438-019-0141-7. eCollection 2019. Hortic Res. 2019. PMID: 30962944 Free PMC article. Review.
Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa.
Bassil NV, Davis TM, Zhang H, Ficklin S, Mittmann M, Webster T, Mahoney L, Wood D, Alperin ES, Rosyara UR, Koehorst-Vanc Putten H, Monfort A, Sargent DJ, Amaya I, Denoyes B, Bianco L, van Dijk T, Pirani A, Iezzoni A, Main D, Peace C, Yang Y, Whitaker V, Verma S, Bellon L, Brew F, Herrera R, van de Weg E. Bassil NV, et al. Among authors: van de weg e, van dijk t. BMC Genomics. 2015 Mar 7;16(1):155. doi: 10.1186/s12864-015-1310-1. BMC Genomics. 2015. PMID: 25886969 Free PMC article.
Development and validation of the Axiom(®) Apple480K SNP genotyping array.
Bianco L, Cestaro A, Linsmith G, Muranty H, Denancé C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, Van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Bianco L, et al. Among authors: van de weg e. Plant J. 2016 Apr;86(1):62-74. doi: 10.1111/tpj.13145. Plant J. 2016. PMID: 26919684 Free article.
Genetic analysis of metabolites in apple fruits indicates an mQTL hotspot for phenolic compounds on linkage group 16.
Khan SA, Chibon PY, de Vos RC, Schipper BA, Walraven E, Beekwilder J, van Dijk T, Finkers R, Visser RG, van de Weg EW, Bovy A, Cestaro A, Velasco R, Jacobsen E, Schouten HJ. Khan SA, et al. Among authors: de vos rc, van dijk t, van de weg ew. J Exp Bot. 2012 May;63(8):2895-908. doi: 10.1093/jxb/err464. Epub 2012 Feb 13. J Exp Bot. 2012. PMID: 22330898 Free PMC article.
ASSIsT: an automatic SNP scoring tool for in- and outbreeding species.
Di Guardo M, Micheletti D, Bianco L, Koehorst-van Putten HJ, Longhi S, Costa F, Aranzana MJ, Velasco R, Arús P, Troggio M, van de Weg EW. Di Guardo M, et al. Bioinformatics. 2015 Dec 1;31(23):3873-4. doi: 10.1093/bioinformatics/btv446. Epub 2015 Aug 6. Bioinformatics. 2015. PMID: 26249809 Free PMC article.
Elucidation of the 'Honeycrisp' pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus×domestica) pedigree-connected SNP data set.
Howard NP, van de Weg E, Bedford DS, Peace CP, Vanderzande S, Clark MD, Teh SL, Cai L, Luby JJ. Howard NP, et al. Among authors: van de weg e. Hortic Res. 2017 Feb 22;4:17003. doi: 10.1038/hortres.2017.3. eCollection 2017. Hortic Res. 2017. PMID: 28243452 Free PMC article.
41 results