Zelezniak A - Search Results

1

Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours.

Yamada T, Waller AS, Raes J, Zelezniak A, Perchat N, Perret A, Salanoubat M, Patil KR, Weissenbach J, Bork P. Yamada T, et al. Among authors: zelezniak a. Mol Syst Biol. 2012 May 8;8:581. doi: 10.1038/msb.2012.13. Mol Syst Biol. 2012. PMID: 22569339 Free PMC article.

2

Author Correction: Computational scoring and experimental evaluation of enzymes generated by neural networks.

Johnson SR, Fu X, Viknander S, Goldin C, Monaco S, Zelezniak A, Yang KK. Johnson SR, et al. Among authors: zelezniak a. Nat Biotechnol. 2024 May 20. doi: 10.1038/s41587-024-02275-3. Online ahead of print. Nat Biotechnol. 2024. PMID: 38769426 No abstract available.

3

Computational scoring and experimental evaluation of enzymes generated by neural networks.

Johnson SR, Fu X, Viknander S, Goldin C, Monaco S, Zelezniak A, Yang KK. Johnson SR, et al. Among authors: zelezniak a. Nat Biotechnol. 2024 Apr 23. doi: 10.1038/s41587-024-02214-2. Online ahead of print. Nat Biotechnol. 2024. PMID: 38653796

4

Cell-cell metabolite exchange creates a pro-survival metabolic environment that extends lifespan.

Correia-Melo C, Kamrad S, Tengölics R, Messner CB, Trebulle P, Townsend S, Jayasree Varma S, Freiwald A, Heineike BM, Campbell K, Herrera-Dominguez L, Kaur Aulakh S, Szyrwiel L, Yu JSL, Zelezniak A, Demichev V, Mülleder M, Papp B, Alam MT, Ralser M. Correia-Melo C, et al. Among authors: zelezniak a. Cell. 2023 Jan 5;186(1):63-79.e21. doi: 10.1016/j.cell.2022.12.007. Cell. 2023. PMID: 36608659 Free article.

5

Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetes.

Zelezniak A, Pers TH, Soares S, Patti ME, Patil KR. Zelezniak A, et al. PLoS Comput Biol. 2010 Apr 1;6(4):e1000729. doi: 10.1371/journal.pcbi.1000729. PLoS Comput Biol. 2010. PMID: 20369014 Free PMC article.

6

Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803.

Montagud A, Zelezniak A, Navarro E, de Córdoba PF, Urchueguía JF, Patil KR. Montagud A, et al. Among authors: zelezniak a. Biotechnol J. 2011 Mar;6(3):330-42. doi: 10.1002/biot.201000109. Epub 2011 Jan 11. Biotechnol J. 2011. PMID: 21226012

7

Contribution of network connectivity in determining the relationship between gene expression and metabolite concentration changes.

Zelezniak A, Sheridan S, Patil KR. Zelezniak A, et al. PLoS Comput Biol. 2014 Apr 24;10(4):e1003572. doi: 10.1371/journal.pcbi.1003572. eCollection 2014 Apr. PLoS Comput Biol. 2014. PMID: 24762675 Free PMC article.

8

Metabolic dependencies drive species co-occurrence in diverse microbial communities.

Zelezniak A, Andrejev S, Ponomarova O, Mende DR, Bork P, Patil KR. Zelezniak A, et al. Proc Natl Acad Sci U S A. 2015 May 19;112(20):6449-54. doi: 10.1073/pnas.1421834112. Epub 2015 May 4. Proc Natl Acad Sci U S A. 2015. PMID: 25941371 Free PMC article.

9

The metabolic background is a global player in Saccharomyces gene expression epistasis.

Alam MT, Zelezniak A, Mülleder M, Shliaha P, Schwarz R, Capuano F, Vowinckel J, Radmanesfahar E, Krüger A, Calvani E, Michel S, Börno S, Christen S, Patil KR, Timmermann B, Lilley KS, Ralser M. Alam MT, et al. Among authors: zelezniak a. Nat Microbiol. 2016 Feb 1;1:15030. doi: 10.1038/nmicrobiol.2015.30. Nat Microbiol. 2016. PMID: 27572163 Free PMC article.

10

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies.

Tramontano M, Andrejev S, Pruteanu M, Klünemann M, Kuhn M, Galardini M, Jouhten P, Zelezniak A, Zeller G, Bork P, Typas A, Patil KR. Tramontano M, et al. Among authors: zelezniak a. Nat Microbiol. 2018 Apr;3(4):514-522. doi: 10.1038/s41564-018-0123-9. Epub 2018 Mar 19. Nat Microbiol. 2018. PMID: 29556107

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