Peplies J - Search Results

1

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies.

Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO. Klindworth A, et al. Among authors: peplies j. Nucleic Acids Res. 2013 Jan 7;41(1):e1. doi: 10.1093/nar/gks808. Epub 2012 Aug 28. Nucleic Acids Res. 2013. PMID: 22933715 Free PMC article.

2

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.

Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO. Pruesse E, et al. Among authors: peplies j. Nucleic Acids Res. 2007;35(21):7188-96. doi: 10.1093/nar/gkm864. Epub 2007 Oct 18. Nucleic Acids Res. 2007. PMID: 17947321 Free PMC article.

3

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

Pruesse E, Peplies J, Glöckner FO. Pruesse E, et al. Among authors: peplies j. Bioinformatics. 2012 Jul 15;28(14):1823-9. doi: 10.1093/bioinformatics/bts252. Epub 2012 May 3. Bioinformatics. 2012. PMID: 22556368 Free PMC article.

4

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.

Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO. Quast C, et al. Among authors: peplies j. Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6. doi: 10.1093/nar/gks1219. Epub 2012 Nov 28. Nucleic Acids Res. 2013. PMID: 23193283 Free PMC article.

5

The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks.

Yilmaz P, Parfrey LW, Yarza P, Gerken J, Pruesse E, Quast C, Schweer T, Peplies J, Ludwig W, Glöckner FO. Yilmaz P, et al. Among authors: peplies j. Nucleic Acids Res. 2014 Jan;42(Database issue):D643-8. doi: 10.1093/nar/gkt1209. Epub 2013 Nov 28. Nucleic Acids Res. 2014. PMID: 24293649 Free PMC article.

6

Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes.

Peplies J, Glöckner FO, Amann R. Peplies J, et al. Appl Environ Microbiol. 2003 Mar;69(3):1397-407. doi: 10.1128/AEM.69.3.1397-1407.2003. Appl Environ Microbiol. 2003. PMID: 12620822 Free PMC article.

7

Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton.

Peplies J, Lau SC, Pernthaler J, Amann R, Glöckner FO. Peplies J, et al. Environ Microbiol. 2004 Jun;6(6):638-45. doi: 10.1111/j.1462-2920.2004.00588.x. Environ Microbiol. 2004. PMID: 15142252

8

Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton.

Peplies J, Glöckner FO, Amann R, Ludwig W. Peplies J, et al. Syst Appl Microbiol. 2004 Sep;27(5):573-80. doi: 10.1078/0723202041748172. Syst Appl Microbiol. 2004. PMID: 15490559

9

A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities.

Peplies J, Lachmund C, Glöckner FO, Manz W. Peplies J, et al. Appl Environ Microbiol. 2006 Jul;72(7):4829-38. doi: 10.1128/AEM.02949-05. Appl Environ Microbiol. 2006. PMID: 16820477 Free PMC article.

10

A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes.

Peplies J, Kottmann R, Ludwig W, Glöckner FO. Peplies J, et al. Syst Appl Microbiol. 2008 Sep;31(4):251-7. doi: 10.1016/j.syapm.2008.08.003. Epub 2008 Sep 10. Syst Appl Microbiol. 2008. PMID: 18786793

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