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Genome-scale coestimation of species and gene trees.
Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V. Boussau B, et al. Among authors: szollosi gj. Genome Res. 2013 Feb;23(2):323-30. doi: 10.1101/gr.141978.112. Epub 2012 Nov 6. Genome Res. 2013. PMID: 23132911 Free PMC article.
Evolution of gene neighborhoods within reconciled phylogenies.
Bérard S, Gallien C, Boussau B, Szöllősi GJ, Daubin V, Tannier E. Bérard S, et al. Among authors: szollosi gj. Bioinformatics. 2012 Sep 15;28(18):i382-i388. doi: 10.1093/bioinformatics/bts374. Bioinformatics. 2012. PMID: 22962456 Free PMC article.
Lateral gene transfer from the dead.
Szöllosi GJ, Tannier E, Lartillot N, Daubin V. Szöllosi GJ, et al. Syst Biol. 2013 May 1;62(3):386-97. doi: 10.1093/sysbio/syt003. Epub 2013 Jan 25. Syst Biol. 2013. PMID: 23355531 Free PMC article.
Efficient exploration of the space of reconciled gene trees.
Szöllõsi GJ, Rosikiewicz W, Boussau B, Tannier E, Daubin V. Szöllõsi GJ, et al. Syst Biol. 2013 Nov;62(6):901-12. doi: 10.1093/sysbio/syt054. Epub 2013 Aug 6. Syst Biol. 2013. PMID: 23925510 Free PMC article.
Lateral gene transfer, rearrangement, reconciliation.
Patterson M, Szöllősi G, Daubin V, Tannier E. Patterson M, et al. BMC Bioinformatics. 2013;14 Suppl 15(Suppl 15):S4. doi: 10.1186/1471-2105-14-S15-S4. Epub 2013 Oct 15. BMC Bioinformatics. 2013. PMID: 24564205 Free PMC article.
The inference of gene trees with species trees.
Szöllősi GJ, Tannier E, Daubin V, Boussau B. Szöllősi GJ, et al. Syst Biol. 2015 Jan;64(1):e42-62. doi: 10.1093/sysbio/syu048. Epub 2014 Jul 28. Syst Biol. 2015. PMID: 25070970 Free PMC article. Review.
Joint amalgamation of most parsimonious reconciled gene trees.
Scornavacca C, Jacox E, Szöllősi GJ. Scornavacca C, et al. Among authors: szollosi gj. Bioinformatics. 2015 Mar 15;31(6):841-8. doi: 10.1093/bioinformatics/btu728. Epub 2014 Nov 6. Bioinformatics. 2015. PMID: 25380957 Free PMC article.
98 results