Seaver SM - Search Results

1

Phenomenological model for predicting the catabolic potential of an arbitrary nutrient.

Seaver SM, Sales-Pardo M, Guimerà R, Amaral LA. Seaver SM, et al. PLoS Comput Biol. 2012;8(11):e1002762. doi: 10.1371/journal.pcbi.1002762. Epub 2012 Nov 1. PLoS Comput Biol. 2012. PMID: 23133365 Free PMC article.

2

Micro-bias and macro-performance.

Seaver SM, Moreira AA, Sales-Pardo M, Malmgren RD, Diermeier D, Amaral LA. Seaver SM, et al. Eur Phys J B. 2009 Feb 1;67(3):369-375. doi: 10.1140/epjb/e2008-00406-4. Eur Phys J B. 2009. PMID: 24860255 Free PMC article.

3

MONSTER: inferring non-covalent interactions in macromolecular structures from atomic coordinate data.

Salerno WJ, Seaver SM, Armstrong BR, Radhakrishnan I. Salerno WJ, et al. Among authors: seaver sm. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W566-8. doi: 10.1093/nar/gkh434. Nucleic Acids Res. 2004. PMID: 15215451 Free PMC article.

4

High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource.

Seaver SM, Gerdes S, Frelin O, Lerma-Ortiz C, Bradbury LM, Zallot R, Hasnain G, Niehaus TD, El Yacoubi B, Pasternak S, Olson R, Pusch G, Overbeek R, Stevens R, de Crécy-Lagard V, Ware D, Hanson AD, Henry CS. Seaver SM, et al. Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9645-50. doi: 10.1073/pnas.1401329111. Epub 2014 Jun 9. Proc Natl Acad Sci U S A. 2014. PMID: 24927599 Free PMC article.

5

A pathway for every product? Tools to discover and design plant metabolism.

Jeffryes JG, Seaver SMD, Faria JP, Henry CS. Jeffryes JG, et al. Among authors: seaver smd. Plant Sci. 2018 Aug;273:61-70. doi: 10.1016/j.plantsci.2018.03.025. Epub 2018 Mar 30. Plant Sci. 2018. PMID: 29907310 Review.

6

Frontiers in metabolic reconstruction and modeling of plant genomes.

Seaver SM, Henry CS, Hanson AD. Seaver SM, et al. J Exp Bot. 2012 Mar;63(6):2247-58. doi: 10.1093/jxb/err371. Epub 2012 Jan 11. J Exp Bot. 2012. PMID: 22238452 Review.

7

Plant B vitamin pathways and their compartmentation: a guide for the perplexed.

Gerdes S, Lerma-Ortiz C, Frelin O, Seaver SM, Henry CS, de Crécy-Lagard V, Hanson AD. Gerdes S, et al. Among authors: seaver sm. J Exp Bot. 2012 Sep;63(15):5379-95. doi: 10.1093/jxb/ers208. Epub 2012 Aug 21. J Exp Bot. 2012. PMID: 22915736 Review.

8

PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency.

Seaver SMD, Lerma-Ortiz C, Conrad N, Mikaili A, Sreedasyam A, Hanson AD, Henry CS. Seaver SMD, et al. Plant J. 2018 Sep;95(6):1102-1113. doi: 10.1111/tpj.14003. Epub 2018 Aug 9. Plant J. 2018. PMID: 29924895 Free article.

9

Tapping the wealth of microbial data in high-throughput metabolic model reconstruction.

Colasanti R, Edirisinghe JN, Khazaei T, Faria JP, Seaver S, Xia F, Henry C. Colasanti R, et al. Methods Mol Biol. 2014;1191:19-45. doi: 10.1007/978-1-4939-1170-7_2. Methods Mol Biol. 2014. PMID: 25178782

10

Improved evidence-based genome-scale metabolic models for maize leaf, embryo, and endosperm.

Seaver SM, Bradbury LM, Frelin O, Zarecki R, Ruppin E, Hanson AD, Henry CS. Seaver SM, et al. Front Plant Sci. 2015 Mar 10;6:142. doi: 10.3389/fpls.2015.00142. eCollection 2015. Front Plant Sci. 2015. PMID: 25806041 Free PMC article.

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