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STRAW: Species TRee Analysis Web server.
Shaw TI, Ruan Z, Glenn TC, Liu L. Shaw TI, et al. Among authors: liu l. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W238-41. doi: 10.1093/nar/gkt377. Epub 2013 May 9. Nucleic Acids Res. 2013. PMID: 23661681 Free PMC article.
Whole-genome analyses resolve early branches in the tree of life of modern birds.
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G. Jarvis ED, et al. Among authors: liu l, liu s, liu b. Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451. Science. 2014. PMID: 25504713 Free PMC article.
A Bayesian model for gene family evolution.
Liu L, Yu L, Kalavacharla V, Liu Z. Liu L, et al. Among authors: liu z. BMC Bioinformatics. 2011 Nov 1;12:426. doi: 10.1186/1471-2105-12-426. BMC Bioinformatics. 2011. PMID: 22044581 Free PMC article.
Phylogenomic analyses data of the avian phylogenomics project.
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, Liu L, Burt D, Ellegren H, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G; Avian Phylogenomics Consortium. Jarvis ED, et al. Among authors: liu l. Gigascience. 2015 Feb 12;4:4. doi: 10.1186/s13742-014-0038-1. eCollection 2015. Gigascience. 2015. PMID: 25741440 Free PMC article.
Estimating phylogenetic trees from genome-scale data.
Liu L, Xi Z, Wu S, Davis CC, Edwards SV. Liu L, et al. Ann N Y Acad Sci. 2015 Dec;1360:36-53. doi: 10.1111/nyas.12747. Epub 2015 Apr 14. Ann N Y Acad Sci. 2015. PMID: 25873435 Review.
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