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Page 1
ENCODE data in the UCSC Genome Browser: year 5 update.
Rosenbloom KR, Sloan CA, Malladi VS, Dreszer TR, Learned K, Kirkup VM, Wong MC, Maddren M, Fang R, Heitner SG, Lee BT, Barber GP, Harte RA, Diekhans M, Long JC, Wilder SP, Zweig AS, Karolchik D, Kuhn RM, Haussler D, Kent WJ. Rosenbloom KR, et al. Among authors: karolchik d. Nucleic Acids Res. 2013 Jan;41(Database issue):D56-63. doi: 10.1093/nar/gks1172. Epub 2012 Nov 27. Nucleic Acids Res. 2013. PMID: 23193274 Free PMC article.
The UCSC Genome Browser Database.
Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ; University of California Santa Cruz. Karolchik D, et al. Nucleic Acids Res. 2003 Jan 1;31(1):51-4. doi: 10.1093/nar/gkg129. Nucleic Acids Res. 2003. PMID: 12519945 Free PMC article.
The UCSC Genome Browser Database: update 2006.
Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ. Hinrichs AS, et al. Among authors: karolchik d. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D590-8. doi: 10.1093/nar/gkj144. Nucleic Acids Res. 2006. PMID: 16381938 Free PMC article.
The UCSC genome browser database: update 2007.
Kuhn RM, Karolchik D, Zweig AS, Trumbower H, Thomas DJ, Thakkapallayil A, Sugnet CW, Stanke M, Smith KE, Siepel A, Rosenbloom KR, Rhead B, Raney BJ, Pohl A, Pedersen JS, Hsu F, Hinrichs AS, Harte RA, Diekhans M, Clawson H, Bejerano G, Barber GP, Baertsch R, Haussler D, Kent WJ. Kuhn RM, et al. Among authors: karolchik d. Nucleic Acids Res. 2007 Jan;35(Database issue):D668-73. doi: 10.1093/nar/gkl928. Epub 2006 Nov 16. Nucleic Acids Res. 2007. PMID: 17142222 Free PMC article.
The UCSC Genome Browser Database: 2008 update.
Karolchik D, Kuhn RM, Baertsch R, Barber GP, Clawson H, Diekhans M, Giardine B, Harte RA, Hinrichs AS, Hsu F, Kober KM, Miller W, Pedersen JS, Pohl A, Raney BJ, Rhead B, Rosenbloom KR, Smith KE, Stanke M, Thakkapallayil A, Trumbower H, Wang T, Zweig AS, Haussler D, Kent WJ. Karolchik D, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D773-9. doi: 10.1093/nar/gkm966. Epub 2007 Dec 17. Nucleic Acids Res. 2008. PMID: 18086701 Free PMC article.
The UCSC Genome Browser Database: update 2009.
Kuhn RM, Karolchik D, Zweig AS, Wang T, Smith KE, Rosenbloom KR, Rhead B, Raney BJ, Pohl A, Pheasant M, Meyer L, Hsu F, Hinrichs AS, Harte RA, Giardine B, Fujita P, Diekhans M, Dreszer T, Clawson H, Barber GP, Haussler D, Kent WJ. Kuhn RM, et al. Among authors: karolchik d. Nucleic Acids Res. 2009 Jan;37(Database issue):D755-61. doi: 10.1093/nar/gkn875. Epub 2008 Nov 7. Nucleic Acids Res. 2009. PMID: 18996895 Free PMC article.
BigWig and BigBed: enabling browsing of large distributed datasets.
Kent WJ, Zweig AS, Barber G, Hinrichs AS, Karolchik D. Kent WJ, et al. Among authors: karolchik d. Bioinformatics. 2010 Sep 1;26(17):2204-7. doi: 10.1093/bioinformatics/btq351. Epub 2010 Jul 17. Bioinformatics. 2010. PMID: 20639541 Free PMC article.
The UCSC Table Browser data retrieval tool.
Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ. Karolchik D, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D493-6. doi: 10.1093/nar/gkh103. Nucleic Acids Res. 2004. PMID: 14681465 Free PMC article.
The UCSC Proteome Browser.
Hsu F, Pringle TH, Kuhn RM, Karolchik D, Diekhans M, Haussler D, Kent WJ. Hsu F, et al. Among authors: karolchik d. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D454-8. doi: 10.1093/nar/gki100. Nucleic Acids Res. 2005. PMID: 15608236 Free PMC article.
Exploring relationships and mining data with the UCSC Gene Sorter.
Kent WJ, Hsu F, Karolchik D, Kuhn RM, Clawson H, Trumbower H, Haussler D. Kent WJ, et al. Among authors: karolchik d. Genome Res. 2005 May;15(5):737-41. doi: 10.1101/gr.3694705. Genome Res. 2005. PMID: 15867434 Free PMC article.
46 results