Finak G - Search Results

1

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

McDavid A, Finak G, Chattopadyay PK, Dominguez M, Lamoreaux L, Ma SS, Roederer M, Gottardo R. McDavid A, et al. Among authors: finak g. Bioinformatics. 2013 Feb 15;29(4):461-7. doi: 10.1093/bioinformatics/bts714. Epub 2012 Dec 24. Bioinformatics. 2013. PMID: 23267174 Free PMC article.

2

Merging mixture components for cell population identification in flow cytometry.

Finak G, Bashashati A, Brinkman R, Gottardo R. Finak G, et al. Adv Bioinformatics. 2009;2009:247646. doi: 10.1155/2009/247646. Epub 2009 Nov 12. Adv Bioinformatics. 2009. PMID: 20049161 Free PMC article.

3

Optimizing transformations for automated, high throughput analysis of flow cytometry data.

Finak G, Perez JM, Weng A, Gottardo R. Finak G, et al. BMC Bioinformatics. 2010 Nov 4;11:546. doi: 10.1186/1471-2105-11-546. BMC Bioinformatics. 2010. PMID: 21050468 Free PMC article.

4

QUAliFiER: an automated pipeline for quality assessment of gated flow cytometry data.

Finak G, Jiang W, Pardo J, Asare A, Gottardo R. Finak G, et al. BMC Bioinformatics. 2012 Sep 28;13:252. doi: 10.1186/1471-2105-13-252. BMC Bioinformatics. 2012. PMID: 23020243 Free PMC article.

5

Highly multiplexed quantitation of gene expression on single cells.

Dominguez MH, Chattopadhyay PK, Ma S, Lamoreaux L, McDavid A, Finak G, Gottardo R, Koup RA, Roederer M. Dominguez MH, et al. Among authors: finak g. J Immunol Methods. 2013 May 31;391(1-2):133-45. doi: 10.1016/j.jim.2013.03.002. Epub 2013 Mar 13. J Immunol Methods. 2013. PMID: 23500781 Free PMC article.

6

Mixture models for single-cell assays with applications to vaccine studies.

Finak G, McDavid A, Chattopadhyay P, Dominguez M, De Rosa S, Roederer M, Gottardo R. Finak G, et al. Biostatistics. 2014 Jan;15(1):87-101. doi: 10.1093/biostatistics/kxt024. Epub 2013 Jul 24. Biostatistics. 2014. PMID: 23887981 Free PMC article.

7

High-throughput flow cytometry data normalization for clinical trials.

Finak G, Jiang W, Krouse K, Wei C, Sanz I, Phippard D, Asare A, De Rosa SC, Self S, Gottardo R. Finak G, et al. Cytometry A. 2014 Mar;85(3):277-86. doi: 10.1002/cyto.a.22433. Epub 2013 Dec 31. Cytometry A. 2014. PMID: 24382714 Free PMC article.

8

Modeling bi-modality improves characterization of cell cycle on gene expression in single cells.

McDavid A, Dennis L, Danaher P, Finak G, Krouse M, Wang A, Webster P, Beechem J, Gottardo R. McDavid A, et al. Among authors: finak g. PLoS Comput Biol. 2014 Jul 17;10(7):e1003696. doi: 10.1371/journal.pcbi.1003696. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25032992 Free PMC article.

9

OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis.

Finak G, Frelinger J, Jiang W, Newell EW, Ramey J, Davis MM, Kalams SA, De Rosa SC, Gottardo R. Finak G, et al. PLoS Comput Biol. 2014 Aug 28;10(8):e1003806. doi: 10.1371/journal.pcbi.1003806. eCollection 2014 Aug. PLoS Comput Biol. 2014. PMID: 25167361 Free PMC article.

10

flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification.

Malek M, Taghiyar MJ, Chong L, Finak G, Gottardo R, Brinkman RR. Malek M, et al. Among authors: finak g. Bioinformatics. 2015 Feb 15;31(4):606-7. doi: 10.1093/bioinformatics/btu677. Epub 2014 Oct 16. Bioinformatics. 2015. PMID: 25378466 Free PMC article.

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