Kapanidis AN - Search Results

1

The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection.

Robb NC, Cordes T, Hwang LC, Gryte K, Duchi D, Craggs TD, Santoso Y, Weiss S, Ebright RH, Kapanidis AN. Robb NC, et al. Among authors: kapanidis an. J Mol Biol. 2013 Mar 11;425(5):875-85. doi: 10.1016/j.jmb.2012.12.015. Epub 2012 Dec 28. J Mol Biol. 2013. PMID: 23274143 Free PMC article.

2

New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB.

Lagrange T, Kapanidis AN, Tang H, Reinberg D, Ebright RH. Lagrange T, et al. Among authors: kapanidis an. Genes Dev. 1998 Jan 1;12(1):34-44. doi: 10.1101/gad.12.1.34. Genes Dev. 1998. PMID: 9420329 Free PMC article.

3

Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA.

Mukhopadhyay J, Kapanidis AN, Mekler V, Kortkhonjia E, Ebright YW, Ebright RH. Mukhopadhyay J, et al. Among authors: kapanidis an. Cell. 2001 Aug 24;106(4):453-63. doi: 10.1016/s0092-8674(01)00464-0. Cell. 2001. PMID: 11525731 Free article.

4

Mean DNA bend angle and distribution of DNA bend angles in the CAP-DNA complex in solution.

Kapanidis AN, Ebright YW, Ludescher RD, Chan S, Ebright RH. Kapanidis AN, et al. J Mol Biol. 2001 Sep 21;312(3):453-68. doi: 10.1006/jmbi.2001.4976. J Mol Biol. 2001. PMID: 11563909

5

Site-specific incorporation of fluorescent probes into protein: hexahistidine-tag-mediated fluorescent labeling with (Ni(2+):nitrilotriacetic Acid (n)-fluorochrome conjugates.

Kapanidis AN, Ebright YW, Ebright RH. Kapanidis AN, et al. J Am Chem Soc. 2001 Dec 5;123(48):12123-5. doi: 10.1021/ja017074a. J Am Chem Soc. 2001. PMID: 11724636 No abstract available.

6

Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex.

Mekler V, Kortkhonjia E, Mukhopadhyay J, Knight J, Revyakin A, Kapanidis AN, Niu W, Ebright YW, Levy R, Ebright RH. Mekler V, et al. Among authors: kapanidis an. Cell. 2002 Mar 8;108(5):599-614. doi: 10.1016/s0092-8674(02)00667-0. Cell. 2002. PMID: 11893332 Free article.

7

Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function.

Mukhopadhyay J, Mekler V, Kortkhonjia E, Kapanidis AN, Ebright YW, Ebright RH. Mukhopadhyay J, et al. Among authors: kapanidis an. Methods Enzymol. 2003;371:144-59. doi: 10.1016/S0076-6879(03)71010-6. Methods Enzymol. 2003. PMID: 14712697 No abstract available.

8

Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules.

Kapanidis AN, Lee NK, Laurence TA, Doose S, Margeat E, Weiss S. Kapanidis AN, et al. Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):8936-41. doi: 10.1073/pnas.0401690101. Epub 2004 Jun 2. Proc Natl Acad Sci U S A. 2004. PMID: 15175430 Free PMC article.

9

Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation.

Lee NK, Kapanidis AN, Wang Y, Michalet X, Mukhopadhyay J, Ebright RH, Weiss S. Lee NK, et al. Among authors: kapanidis an. Biophys J. 2005 Apr;88(4):2939-53. doi: 10.1529/biophysj.104.054114. Epub 2005 Jan 14. Biophys J. 2005. PMID: 15653725 Free PMC article.

10

Alternating-laser excitation of single molecules.

Kapanidis AN, Laurence TA, Lee NK, Margeat E, Kong X, Weiss S. Kapanidis AN, et al. Acc Chem Res. 2005 Jul;38(7):523-33. doi: 10.1021/ar0401348. Acc Chem Res. 2005. PMID: 16028886

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