Olshen A - Search Results

1

Combining integrated genomics and functional genomics to dissect the biology of a cancer-associated, aberrant transcription factor, the ASPSCR1-TFE3 fusion oncoprotein.

Kobos R, Nagai M, Tsuda M, Merl MY, Saito T, Laé M, Mo Q, Olshen A, Lianoglou S, Leslie C, Ostrovnaya I, Antczak C, Djaballah H, Ladanyi M. Kobos R, et al. Among authors: olshen a. J Pathol. 2013 Apr;229(5):743-754. doi: 10.1002/path.4158. Epub 2013 Mar 5. J Pathol. 2013. PMID: 23288701 Free PMC article.

2

Global gene expression profiling of PAX-FKHR fusion-positive alveolar and PAX-FKHR fusion-negative embryonal rhabdomyosarcomas.

Laé M, Ahn EH, Mercado GE, Chuai S, Edgar M, Pawel BR, Olshen A, Barr FG, Ladanyi M. Laé M, et al. Among authors: olshen a. J Pathol. 2007 Jun;212(2):143-51. doi: 10.1002/path.2170. J Pathol. 2007. PMID: 17471488

3

Pattern discovery and cancer gene identification in integrated cancer genomic data.

Mo Q, Wang S, Seshan VE, Olshen AB, Schultz N, Sander C, Powers RS, Ladanyi M, Shen R. Mo Q, et al. Proc Natl Acad Sci U S A. 2013 Mar 12;110(11):4245-50. doi: 10.1073/pnas.1208949110. Epub 2013 Feb 21. Proc Natl Acad Sci U S A. 2013. PMID: 23431203 Free PMC article.

4

The EWSR1/NR4A3 fusion protein of extraskeletal myxoid chondrosarcoma activates the PPARG nuclear receptor gene.

Filion C, Motoi T, Olshen AB, Laé M, Emnett RJ, Gutmann DH, Perry A, Ladanyi M, Labelle Y. Filion C, et al. Among authors: olshen ab. J Pathol. 2009 Jan;217(1):83-93. doi: 10.1002/path.2445. J Pathol. 2009. PMID: 18855877 Free PMC article.

5

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis.

Shen R, Olshen AB, Ladanyi M. Shen R, et al. Bioinformatics. 2009 Nov 15;25(22):2906-12. doi: 10.1093/bioinformatics/btp543. Epub 2009 Sep 16. Bioinformatics. 2009. PMID: 19759197 Free PMC article.

6

Clonality: an R package for testing clonal relatedness of two tumors from the same patient based on their genomic profiles.

Ostrovnaya I, Seshan VE, Olshen AB, Begg CB. Ostrovnaya I, et al. Bioinformatics. 2011 Jun 15;27(12):1698-9. doi: 10.1093/bioinformatics/btr267. Epub 2011 May 5. Bioinformatics. 2011. PMID: 21546399 Free PMC article.

7

Integrative subtype discovery in glioblastoma using iCluster.

Shen R, Mo Q, Schultz N, Seshan VE, Olshen AB, Huse J, Ladanyi M, Sander C. Shen R, et al. PLoS One. 2012;7(4):e35236. doi: 10.1371/journal.pone.0035236. Epub 2012 Apr 23. PLoS One. 2012. PMID: 22539962 Free PMC article.

8

A classification model for distinguishing copy number variants from cancer-related alterations.

Ostrovnaya I, Nanjangud G, Olshen AB. Ostrovnaya I, et al. BMC Bioinformatics. 2010 Jun 2;11:297. doi: 10.1186/1471-2105-11-297. BMC Bioinformatics. 2010. PMID: 20525196 Free PMC article.

9

Identification of a novel, recurrent HEY1-NCOA2 fusion in mesenchymal chondrosarcoma based on a genome-wide screen of exon-level expression data.

Wang L, Motoi T, Khanin R, Olshen A, Mertens F, Bridge J, Dal Cin P, Antonescu CR, Singer S, Hameed M, Bovee JV, Hogendoorn PC, Socci N, Ladanyi M. Wang L, et al. Among authors: olshen a. Genes Chromosomes Cancer. 2012 Feb;51(2):127-39. doi: 10.1002/gcc.20937. Epub 2011 Oct 27. Genes Chromosomes Cancer. 2012. PMID: 22034177 Free PMC article.

10

A metastasis or a second independent cancer? Evaluating the clonal origin of tumors using array copy number data.

Ostrovnaya I, Olshen AB, Seshan VE, Orlow I, Albertson DG, Begg CB. Ostrovnaya I, et al. Stat Med. 2010 Jul 10;29(15):1608-21. doi: 10.1002/sim.3866. Stat Med. 2010. PMID: 20205270 Free PMC article.

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