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Page 1
DNA-binding specificities of human transcription factors.
Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. Jolma A, et al. Among authors: rastas p. Cell. 2013 Jan 17;152(1-2):327-39. doi: 10.1016/j.cell.2012.12.009. Cell. 2013. PMID: 23332764 Free article.
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera.
Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, de Jong MA, Duplouy A, Smolander OP, Vogel H, McCoy RC, Qian K, Chong WS, Zhang Q, Ahmad F, Haukka JK, Joshi A, Salojärvi J, Wheat CW, Grosse-Wilde E, Hughes D, Katainen R, Pitkänen E, Ylinen J, Waterhouse RM, Turunen M, Vähärautio A, Ojanen SP, Schulman AH, Taipale M, Lawson D, Ukkonen E, Mäkinen V, Goldsmith MR, Holm L, Auvinen P, Frilander MJ, Hanski I. Ahola V, et al. Among authors: rastas p. Nat Commun. 2014 Sep 5;5:4737. doi: 10.1038/ncomms5737. Nat Commun. 2014. PMID: 25189940 Free PMC article.
MOODS: fast search for position weight matrix matches in DNA sequences.
Korhonen J, Martinmäki P, Pizzi C, Rastas P, Ukkonen E. Korhonen J, et al. Among authors: rastas p. Bioinformatics. 2009 Dec 1;25(23):3181-2. doi: 10.1093/bioinformatics/btp554. Epub 2009 Sep 22. Bioinformatics. 2009. PMID: 19773334 Free PMC article.
Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map.
Smolander OP, Blande D, Ahola V, Rastas P, Tanskanen J, Kammonen JI, Oostra V, Pellegrini L, Ikonen S, Dallas T, DiLeo MF, Duplouy A, Duru IC, Halimaa P, Kahilainen A, Kuwar SS, Kärenlampi SO, Lafuente E, Luo S, Makkonen J, Nair A, de la Paz Celorio-Mancera M, Pennanen V, Ruokolainen A, Sundell T, Tervahauta AI, Twort V, van Bergen E, Österman-Udd J, Paulin L, Frilander MJ, Auvinen P, Saastamoinen M. Smolander OP, et al. Among authors: rastas p. Gigascience. 2022 Jan 12;11(1):giab097. doi: 10.1093/gigascience/giab097. Gigascience. 2022. PMID: 35022701 Free PMC article.
High genetic load in an old isolated butterfly population.
Mattila AL, Duplouy A, Kirjokangas M, Lehtonen R, Rastas P, Hanski I. Mattila AL, et al. Among authors: rastas p. Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):E2496-505. doi: 10.1073/pnas.1205789109. Epub 2012 Aug 20. Proc Natl Acad Sci U S A. 2012. PMID: 22908265 Free PMC article.
Unprecedented reorganization of holocentric chromosomes provides insights into the enigma of lepidopteran chromosome evolution.
Hill J, Rastas P, Hornett EA, Neethiraj R, Clark N, Morehouse N, de la Paz Celorio-Mancera M, Cols JC, Dircksen H, Meslin C, Keehnen N, Pruisscher P, Sikkink K, Vives M, Vogel H, Wiklund C, Woronik A, Boggs CL, Nylin S, Wheat CW. Hill J, et al. Among authors: rastas p. Sci Adv. 2019 Jun 12;5(6):eaau3648. doi: 10.1126/sciadv.aau3648. eCollection 2019 Jun. Sci Adv. 2019. PMID: 31206013 Free PMC article.
Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch.
Salojärvi J, Smolander OP, Nieminen K, Rajaraman S, Safronov O, Safdari P, Lamminmäki A, Immanen J, Lan T, Tanskanen J, Rastas P, Amiryousefi A, Jayaprakash B, Kammonen JI, Hagqvist R, Eswaran G, Ahonen VH, Serra JA, Asiegbu FO, de Dios Barajas-Lopez J, Blande D, Blokhina O, Blomster T, Broholm S, Brosché M, Cui F, Dardick C, Ehonen SE, Elomaa P, Escamez S, Fagerstedt KV, Fujii H, Gauthier A, Gollan PJ, Halimaa P, Heino PI, Himanen K, Hollender C, Kangasjärvi S, Kauppinen L, Kelleher CT, Kontunen-Soppela S, Koskinen JP, Kovalchuk A, Kärenlampi SO, Kärkönen AK, Lim KJ, Leppälä J, Macpherson L, Mikola J, Mouhu K, Mähönen AP, Niinemets Ü, Oksanen E, Overmyer K, Palva ET, Pazouki L, Pennanen V, Puhakainen T, Poczai P, Possen BJHM, Punkkinen M, Rahikainen MM, Rousi M, Ruonala R, van der Schoot C, Shapiguzov A, Sierla M, Sipilä TP, Sutela S, Teeri TH, Tervahauta AI, Vaattovaara A, Vahala J, Vetchinnikova L, Welling A, Wrzaczek M, Xu E, Paulin LG, Schulman AH, Lascoux M, Albert VA, Auvinen P, Helariutta Y, Kangasjärvi J. Salojärvi J, et al. Among authors: rastas p. Nat Genet. 2017 Jun;49(6):904-912. doi: 10.1038/ng.3862. Epub 2017 May 8. Nat Genet. 2017. PMID: 28481341 Free article.
Kermit: linkage map guided long read assembly.
Walve R, Rastas P, Salmela L. Walve R, et al. Among authors: rastas p. Algorithms Mol Biol. 2019 Mar 20;14:8. doi: 10.1186/s13015-019-0143-x. eCollection 2019. Algorithms Mol Biol. 2019. PMID: 30930956 Free PMC article.
54 results