Miller CS - Search Results

1

Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments.

Miller CS, Handley KM, Wrighton KC, Frischkorn KR, Thomas BC, Banfield JF. Miller CS, et al. PLoS One. 2013;8(2):e56018. doi: 10.1371/journal.pone.0056018. Epub 2013 Feb 6. PLoS One. 2013. PMID: 23405248 Free PMC article.

2

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data.

Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF. Miller CS, et al. Genome Biol. 2011;12(5):R44. doi: 10.1186/gb-2011-12-5-r44. Epub 2011 May 19. Genome Biol. 2011. PMID: 21595876 Free PMC article.

3

A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity.

Fujishima K, Sugahara J, Miller CS, Baker BJ, Di Giulio M, Takesue K, Sato A, Tomita M, Banfield JF, Kanai A. Fujishima K, et al. Among authors: miller cs. Nucleic Acids Res. 2011 Dec;39(22):9695-704. doi: 10.1093/nar/gkr692. Epub 2011 Aug 31. Nucleic Acids Res. 2011. PMID: 21880595 Free PMC article.

4

Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities.

Justice NB, Pan C, Mueller R, Spaulding SE, Shah V, Sun CL, Yelton AP, Miller CS, Thomas BC, Shah M, VerBerkmoes N, Hettich R, Banfield JF. Justice NB, et al. Among authors: miller cs. Appl Environ Microbiol. 2012 Dec;78(23):8321-30. doi: 10.1128/AEM.01938-12. Epub 2012 Sep 21. Appl Environ Microbiol. 2012. PMID: 23001646 Free PMC article.

5

Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla.

Wrighton KC, Thomas BC, Sharon I, Miller CS, Castelle CJ, VerBerkmoes NC, Wilkins MJ, Hettich RL, Lipton MS, Williams KH, Long PE, Banfield JF. Wrighton KC, et al. Among authors: miller cs. Science. 2012 Sep 28;337(6102):1661-5. doi: 10.1126/science.1224041. Science. 2012. PMID: 23019650

6

Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community.

Handley KM, VerBerkmoes NC, Steefel CI, Williams KH, Sharon I, Miller CS, Frischkorn KR, Chourey K, Thomas BC, Shah MB, Long PE, Hettich RL, Banfield JF. Handley KM, et al. Among authors: miller cs. ISME J. 2013 Apr;7(4):800-16. doi: 10.1038/ismej.2012.148. Epub 2012 Nov 29. ISME J. 2013. PMID: 23190730 Free PMC article.

7

Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.

Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LA, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR, Banfield JF, Long PE, Lipton MS. Wilkins MJ, et al. Among authors: miller cs. PLoS One. 2013;8(3):e57819. doi: 10.1371/journal.pone.0057819. Epub 2013 Mar 5. PLoS One. 2013. PMID: 23472107 Free PMC article.

8

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants.

Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield JF. Brooks B, et al. Among authors: miller cs. Microbiome. 2014 Jan 28;2(1):1. doi: 10.1186/2049-2618-2-1. Microbiome. 2014. PMID: 24468033 Free PMC article.

9

Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points.

Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield JF. Handley KM, et al. Among authors: miller cs. Environ Microbiol. 2015 Mar;17(3):622-36. doi: 10.1111/1462-2920.12467. Epub 2014 Apr 18. Environ Microbiol. 2015. PMID: 24674078

10

Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem.

Andrade K, Logemann J, Heidelberg KB, Emerson JB, Comolli LR, Hug LA, Probst AJ, Keillar A, Thomas BC, Miller CS, Allen EE, Moreau JW, Brocks JJ, Banfield JF. Andrade K, et al. Among authors: miller cs. ISME J. 2015 Dec;9(12):2697-711. doi: 10.1038/ismej.2015.66. Epub 2015 Apr 28. ISME J. 2015. PMID: 25918833 Free PMC article.

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