Widom J - Search Results

1

High-resolution nucleosome mapping of targeted regions using BAC-based enrichment.

Yigit E, Zhang Q, Xi L, Grilley D, Widom J, Wang JP, Rao A, Pipkin ME. Yigit E, et al. Among authors: widom j. Nucleic Acids Res. 2013 Apr;41(7):e87. doi: 10.1093/nar/gkt081. Epub 2013 Feb 14. Nucleic Acids Res. 2013. PMID: 23413004 Free PMC article.

2

A map of nucleosome positions in yeast at base-pair resolution.

Brogaard K, Xi L, Wang JP, Widom J. Brogaard K, et al. Among authors: widom j. Nature. 2012 Jun 28;486(7404):496-501. doi: 10.1038/nature11142. Nature. 2012. PMID: 22722846 Free PMC article.

3

A chemical approach to mapping nucleosomes at base pair resolution in yeast.

Brogaard KR, Xi L, Wang JP, Widom J. Brogaard KR, et al. Among authors: widom j. Methods Enzymol. 2012;513:315-34. doi: 10.1016/B978-0-12-391938-0.00014-8. Methods Enzymol. 2012. PMID: 22929776 Free PMC article.

4

Nucleosome mapping across the CFTR locus identifies novel regulatory factors.

Yigit E, Bischof JM, Zhang Z, Ott CJ, Kerschner JL, Leir SH, Buitrago-Delgado E, Zhang Q, Wang JP, Widom J, Harris A. Yigit E, et al. Among authors: widom j. Nucleic Acids Res. 2013 Mar 1;41(5):2857-68. doi: 10.1093/nar/gks1462. Epub 2013 Jan 15. Nucleic Acids Res. 2013. PMID: 23325854 Free PMC article.

5

High-density nucleosome occupancy map of human chromosome 9p21-22 reveals chromatin organization of the type I interferon gene cluster.

Freaney JE, Zhang Q, Yigit E, Kim R, Widom J, Wang JP, Horvath CM. Freaney JE, et al. Among authors: widom j. J Interferon Cytokine Res. 2014 Sep;34(9):676-85. doi: 10.1089/jir.2013.0118. Epub 2014 Mar 27. J Interferon Cytokine Res. 2014. PMID: 24673249 Free PMC article.

6

Predicting nucleosome positioning using a duration Hidden Markov Model.

Xi L, Fondufe-Mittendorf Y, Xia L, Flatow J, Widom J, Wang JP. Xi L, et al. Among authors: widom j. BMC Bioinformatics. 2010 Jun 24;11:346. doi: 10.1186/1471-2105-11-346. BMC Bioinformatics. 2010. PMID: 20576140 Free PMC article.

7

Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning.

Moyle-Heyrman G, Zaichuk T, Xi L, Zhang Q, Uhlenbeck OC, Holmgren R, Widom J, Wang JP. Moyle-Heyrman G, et al. Among authors: widom j. Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20158-63. doi: 10.1073/pnas.1315809110. Epub 2013 Nov 25. Proc Natl Acad Sci U S A. 2013. PMID: 24277842 Free PMC article.

8

A locally convoluted cluster model for nucleosome positioning signals in chemical map.

Xi L, Brogaard K, Zhang Q, Lindsay B, Widom J, Wang JP. Xi L, et al. Among authors: widom j. J Am Stat Assoc. 2014 Jan 1;109(505):48-62. doi: 10.1080/01621459.2013.862169. J Am Stat Assoc. 2014. PMID: 24678133 Free PMC article.

9

Single-cell nucleosome mapping reveals the molecular basis of gene expression heterogeneity.

Small EC, Xi L, Wang JP, Widom J, Licht JD. Small EC, et al. Among authors: widom j. Proc Natl Acad Sci U S A. 2014 Jun 17;111(24):E2462-71. doi: 10.1073/pnas.1400517111. Epub 2014 Jun 2. Proc Natl Acad Sci U S A. 2014. PMID: 24889621 Free PMC article.

10

Differential Nucleosome Occupancies across Oct4-Sox2 Binding Sites in Murine Embryonic Stem Cells.

Sebeson A, Xi L, Zhang Q, Sigmund A, Wang JP, Widom J, Wang X. Sebeson A, et al. Among authors: widom j. PLoS One. 2015 May 18;10(5):e0127214. doi: 10.1371/journal.pone.0127214. eCollection 2015. PLoS One. 2015. PMID: 25992972 Free PMC article.

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