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Rfam: updates to the RNA families database.
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A. Gardner PP, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D136-40. doi: 10.1093/nar/gkn766. Epub 2008 Oct 25. Nucleic Acids Res. 2009. PMID: 18953034 Free PMC article.
SnoPatrol: how many snoRNA genes are there?
Gardner PP, Bateman A, Poole AM. Gardner PP, et al. J Biol. 2010;9(1):4. doi: 10.1186/jbiol211. Epub 2010 Jan 25. J Biol. 2010. PMID: 20122292 Free PMC article.
Rfam: Wikipedia, clans and the "decimal" release.
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A. Gardner PP, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D141-5. doi: 10.1093/nar/gkq1129. Epub 2010 Nov 9. Nucleic Acids Res. 2011. PMID: 21062808 Free PMC article.
RNIE: genome-wide prediction of bacterial intrinsic terminators.
Gardner PP, Barquist L, Bateman A, Nawrocki EP, Weinberg Z. Gardner PP, et al. Nucleic Acids Res. 2011 Aug;39(14):5845-52. doi: 10.1093/nar/gkr168. Epub 2011 Apr 7. Nucleic Acids Res. 2011. PMID: 21478170 Free PMC article.
Rfam 11.0: 10 years of RNA families.
Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A. Burge SW, et al. Among authors: gardner pp. Nucleic Acids Res. 2013 Jan;41(Database issue):D226-32. doi: 10.1093/nar/gks1005. Epub 2012 Nov 3. Nucleic Acids Res. 2013. PMID: 23125362 Free PMC article.
Genome and transcriptome adaptation accompanying emergence of the definitive type 2 host-restricted Salmonella enterica serovar Typhimurium pathovar.
Kingsley RA, Kay S, Connor T, Barquist L, Sait L, Holt KE, Sivaraman K, Wileman T, Goulding D, Clare S, Hale C, Seshasayee A, Harris S, Thomson NR, Gardner P, Rabsch W, Wigley P, Humphrey T, Parkhill J, Dougan G. Kingsley RA, et al. mBio. 2013 Aug 27;4(5):e00565-13. doi: 10.1128/mBio.00565-13. mBio. 2013. PMID: 23982073 Free PMC article.
An introduction to RNA databases.
Hoeppner MP, Barquist LE, Gardner PP. Hoeppner MP, et al. Among authors: gardner pp. Methods Mol Biol. 2014;1097:107-23. doi: 10.1007/978-1-62703-709-9_6. Methods Mol Biol. 2014. PMID: 24639157 Review.
80 results