Davidson NM - Search Results

1

Identification of recurrent FGFR3 fusion genes in lung cancer through kinome-centred RNA sequencing.

Majewski IJ, Mittempergher L, Davidson NM, Bosma A, Willems SM, Horlings HM, de Rink I, Greger L, Hooijer GK, Peters D, Nederlof PM, Hofland I, de Jong J, Wesseling J, Kluin RJ, Brugman W, Kerkhoven R, Nieboer F, Roepman P, Broeks A, Muley TR, Jassem J, Niklinski J, van Zandwijk N, Brazma A, Oshlack A, van den Heuvel M, Bernards R. Majewski IJ, et al. Among authors: davidson nm. J Pathol. 2013 Jul;230(3):270-6. doi: 10.1002/path.4209. J Pathol. 2013. PMID: 23661334

2

Corset: enabling differential gene expression analysis for de novo assembled transcriptomes.

Davidson NM, Oshlack A. Davidson NM, et al. Genome Biol. 2014 Jul 26;15(7):410. doi: 10.1186/s13059-014-0410-6. Genome Biol. 2014. PMID: 25063469 Free PMC article.

3

JAFFA: High sensitivity transcriptome-focused fusion gene detection.

Davidson NM, Majewski IJ, Oshlack A. Davidson NM, et al. Genome Med. 2015 May 11;7(1):43. doi: 10.1186/s13073-015-0167-x. eCollection 2015. Genome Med. 2015. PMID: 26019724 Free PMC article.

4

Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seq.

Ayers KL, Lambeth LS, Davidson NM, Sinclair AH, Oshlack A, Smith CA. Ayers KL, et al. Among authors: davidson nm. BMC Genomics. 2015 Sep 16;16(1):704. doi: 10.1186/s12864-015-1886-5. BMC Genomics. 2015. PMID: 26377738 Free PMC article.

5

Erratum to: 'Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seq'.

Ayers KL, Lambeth LS, Davidson NM, Sinclair AH, Oshlack A, Smith CA. Ayers KL, et al. Among authors: davidson nm. BMC Genomics. 2016 Mar 2;17:169. doi: 10.1186/s12864-016-2439-2. BMC Genomics. 2016. PMID: 26936757 Free PMC article. No abstract available.

6

SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes.

Davidson NM, Hawkins ADK, Oshlack A. Davidson NM, et al. Genome Biol. 2017 Aug 4;18(1):148. doi: 10.1186/s13059-017-1284-1. Genome Biol. 2017. PMID: 28778180 Free PMC article.

7

Erratum to: SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes.

Davidson NM, Hawkins ADK, Oshlack A. Davidson NM, et al. Genome Biol. 2017 Aug 24;18(1):160. doi: 10.1186/s13059-017-1303-2. Genome Biol. 2017. PMID: 28836999 Free PMC article. No abstract available.

8

Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis.

Davidson NM, Oshlack A. Davidson NM, et al. Gigascience. 2018 May 1;7(5):giy045. doi: 10.1093/gigascience/giy045. Gigascience. 2018. PMID: 29722876 Free PMC article.

9

Clinker: visualizing fusion genes detected in RNA-seq data.

Schmidt BM, Davidson NM, Hawkins ADK, Bartolo R, Majewski IJ, Ekert PG, Oshlack A. Schmidt BM, et al. Among authors: davidson nm. Gigascience. 2018 Jul 1;7(7):giy079. doi: 10.1093/gigascience/giy079. Gigascience. 2018. PMID: 29982439 Free PMC article.

10

Using equivalence class counts for fast and accurate testing of differential transcript usage.

Cmero M, Davidson NM, Oshlack A. Cmero M, et al. Among authors: davidson nm. F1000Res. 2019 Mar 7;8:265. doi: 10.12688/f1000research.18276.2. eCollection 2019. F1000Res. 2019. PMID: 31143443 Free PMC article.

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