Deng Y - Search Results

1

The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities.

Lee YJ, van Nostrand JD, Tu Q, Lu Z, Cheng L, Yuan T, Deng Y, Carter MQ, He Z, Wu L, Yang F, Xu J, Zhou J. Lee YJ, et al. Among authors: deng y. ISME J. 2013 Oct;7(10):1974-84. doi: 10.1038/ismej.2013.88. Epub 2013 Jun 13. ISME J. 2013. PMID: 23765101 Free PMC article.

2

Design and analysis of mismatch probes for long oligonucleotide microarrays.

Deng Y, He Z, Van Nostrand JD, Zhou J. Deng Y, et al. BMC Genomics. 2008 Oct 17;9:491. doi: 10.1186/1471-2164-9-491. BMC Genomics. 2008. PMID: 18928550 Free PMC article.

3

GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent.

Wang F, Zhou H, Meng J, Peng X, Jiang L, Sun P, Zhang C, Van Nostrand JD, Deng Y, He Z, Wu L, Zhou J, Xiao X. Wang F, et al. Among authors: deng y. Proc Natl Acad Sci U S A. 2009 Mar 24;106(12):4840-5. doi: 10.1073/pnas.0810418106. Epub 2009 Mar 9. Proc Natl Acad Sci U S A. 2009. PMID: 19273854 Free PMC article.

4

GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer.

Van Nostrand JD, Wu WM, Wu L, Deng Y, Carley J, Carroll S, He Z, Gu B, Luo J, Criddle CS, Watson DB, Jardine PM, Marsh TL, Tiedje JM, Hazen TC, Zhou J. Van Nostrand JD, et al. Among authors: deng y. Environ Microbiol. 2009 Oct;11(10):2611-26. doi: 10.1111/j.1462-2920.2009.01986.x. Epub 2009 Jul 14. Environ Microbiol. 2009. PMID: 19624708

5

Microarray-based analysis of microbial functional diversity along an oil contamination gradient in oil field.

Liang Y, Li G, Van Nostrand JD, He Z, Wu L, Deng Y, Zhang X, Zhou J. Liang Y, et al. Among authors: deng y. FEMS Microbiol Ecol. 2009 Nov;70(2):324-33. doi: 10.1111/j.1574-6941.2009.00774.x. Epub 2009 Aug 28. FEMS Microbiol Ecol. 2009. PMID: 19780823 Free article.

6

Development of a common oligonucleotide reference standard for microarray data normalization and comparison across different microbial communities.

Liang Y, He Z, Wu L, Deng Y, Li G, Zhou J. Liang Y, et al. Among authors: deng y. Appl Environ Microbiol. 2010 Feb;76(4):1088-94. doi: 10.1128/AEM.02749-09. Epub 2009 Dec 28. Appl Environ Microbiol. 2010. PMID: 20038701 Free PMC article.

7

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community.

Hemme CL, Deng Y, Gentry TJ, Fields MW, Wu L, Barua S, Barry K, Tringe SG, Watson DB, He Z, Hazen TC, Tiedje JM, Rubin EM, Zhou J. Hemme CL, et al. Among authors: deng y. ISME J. 2010 May;4(5):660-72. doi: 10.1038/ismej.2009.154. Epub 2010 Feb 25. ISME J. 2010. PMID: 20182523 Free article.

8

Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation.

Xu M, Wu WM, Wu L, He Z, Van Nostrand JD, Deng Y, Luo J, Carley J, Ginder-Vogel M, Gentry TJ, Gu B, Watson D, Jardine PM, Marsh TL, Tiedje JM, Hazen T, Criddle CS, Zhou J. Xu M, et al. Among authors: deng y. ISME J. 2010 Aug;4(8):1060-70. doi: 10.1038/ismej.2010.31. Epub 2010 Mar 18. ISME J. 2010. PMID: 20237512 Free article.

9

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2.

He Z, Xu M, Deng Y, Kang S, Kellogg L, Wu L, Van Nostrand JD, Hobbie SE, Reich PB, Zhou J. He Z, et al. Among authors: deng y. Ecol Lett. 2010 May;13(5):564-75. doi: 10.1111/j.1461-0248.2010.01453.x. Epub 2010 Mar 23. Ecol Lett. 2010. PMID: 20337697

10

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity.

He Z, Deng Y, Van Nostrand JD, Tu Q, Xu M, Hemme CL, Li X, Wu L, Gentry TJ, Yin Y, Liebich J, Hazen TC, Zhou J. He Z, et al. Among authors: deng y. ISME J. 2010 Sep;4(9):1167-79. doi: 10.1038/ismej.2010.46. Epub 2010 Apr 29. ISME J. 2010. PMID: 20428223 Free article.

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