Abe N - Search Results

1

A combinatorial regulatory signature controls terminal differentiation of the dopaminergic nervous system in C. elegans.

Doitsidou M, Flames N, Topalidou I, Abe N, Felton T, Remesal L, Popovitchenko T, Mann R, Chalfie M, Hobert O. Doitsidou M, et al. Among authors: abe n. Genes Dev. 2013 Jun 15;27(12):1391-405. doi: 10.1101/gad.217224.113. Genes Dev. 2013. PMID: 23788625 Free PMC article.

2

The LIM and POU homeobox genes ttx-3 and unc-86 act as terminal selectors in distinct cholinergic and serotonergic neuron types.

Zhang F, Bhattacharya A, Nelson JC, Abe N, Gordon P, Lloret-Fernandez C, Maicas M, Flames N, Mann RS, Colón-Ramos DA, Hobert O. Zhang F, et al. Among authors: abe n. Development. 2014 Jan;141(2):422-35. doi: 10.1242/dev.099721. Epub 2013 Dec 18. Development. 2014. PMID: 24353061 Free PMC article.

3

Low affinity binding site clusters confer hox specificity and regulatory robustness.

Crocker J, Abe N, Rinaldi L, McGregor AP, Frankel N, Wang S, Alsawadi A, Valenti P, Plaza S, Payre F, Mann RS, Stern DL. Crocker J, et al. Among authors: abe n. Cell. 2015 Jan 15;160(1-2):191-203. doi: 10.1016/j.cell.2014.11.041. Epub 2014 Dec 31. Cell. 2015. PMID: 25557079 Free PMC article.

4

Deconvolving the recognition of DNA shape from sequence.

Abe N, Dror I, Yang L, Slattery M, Zhou T, Bussemaker HJ, Rohs R, Mann RS. Abe N, et al. Cell. 2015 Apr 9;161(2):307-18. doi: 10.1016/j.cell.2015.02.008. Epub 2015 Apr 2. Cell. 2015. PMID: 25843630 Free PMC article.

5

Context-Dependent Gene Regulation by Homeodomain Transcription Factor Complexes Revealed by Shape-Readout Deficient Proteins.

Kribelbauer JF, Loker RE, Feng S, Rastogi C, Abe N, Rube HT, Bussemaker HJ, Mann RS. Kribelbauer JF, et al. Among authors: abe n. Mol Cell. 2020 Apr 2;78(1):152-167.e11. doi: 10.1016/j.molcel.2020.01.027. Epub 2020 Feb 12. Mol Cell. 2020. PMID: 32053778 Free PMC article.

6

SELEX-seq: a method for characterizing the complete repertoire of binding site preferences for transcription factor complexes.

Riley TR, Slattery M, Abe N, Rastogi C, Liu D, Mann RS, Bussemaker HJ. Riley TR, et al. Among authors: abe n. Methods Mol Biol. 2014;1196:255-78. doi: 10.1007/978-1-4939-1242-1_16. Methods Mol Biol. 2014. PMID: 25151169 Free PMC article.

7

Quantitative modeling of transcription factor binding specificities using DNA shape.

Zhou T, Shen N, Yang L, Abe N, Horton J, Mann RS, Bussemaker HJ, Gordân R, Rohs R. Zhou T, et al. Among authors: abe n. Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4654-9. doi: 10.1073/pnas.1422023112. Epub 2015 Mar 9. Proc Natl Acad Sci U S A. 2015. PMID: 25775564 Free PMC article.

8

Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins.

Slattery M, Riley T, Liu P, Abe N, Gomez-Alcala P, Dror I, Zhou T, Rohs R, Honig B, Bussemaker HJ, Mann RS. Slattery M, et al. Among authors: abe n. Cell. 2011 Dec 9;147(6):1270-82. doi: 10.1016/j.cell.2011.10.053. Cell. 2011. PMID: 22153072 Free PMC article.

9

Dense and pleiotropic regulatory information in a developmental enhancer.

Fuqua T, Jordan J, van Breugel ME, Halavatyi A, Tischer C, Polidoro P, Abe N, Tsai A, Mann RS, Stern DL, Crocker J. Fuqua T, et al. Among authors: abe n. Nature. 2020 Nov;587(7833):235-239. doi: 10.1038/s41586-020-2816-5. Epub 2020 Oct 14. Nature. 2020. PMID: 33057197 Free PMC article.

10

Development of a Versatile Plant-Derived Mitochondrial Targeting Sequence Based on a Reporter Protein Sorting Analysis and Biological Information.

Abe N, Odahara M, Morey SR, Numata K. Abe N, et al. ACS Chem Biol. 2024 Dec 2. doi: 10.1021/acschembio.4c00625. Online ahead of print. ACS Chem Biol. 2024. PMID: 39622491

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