Gautheret D - Search Results

1

Detection of non-coding RNA in bacteria and archaea using the DETR'PROK Galaxy pipeline.

Toffano-Nioche C, Luo Y, Kuchly C, Wallon C, Steinbach D, Zytnicki M, Jacq A, Gautheret D. Toffano-Nioche C, et al. Among authors: gautheret d. Methods. 2013 Sep 1;63(1):60-5. doi: 10.1016/j.ymeth.2013.06.003. Epub 2013 Jun 25. Methods. 2013. PMID: 23806640 Free article.

2

Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles.

Marchais A, Naville M, Bohn C, Bouloc P, Gautheret D. Marchais A, et al. Among authors: gautheret d. Genome Res. 2009 Jun;19(6):1084-92. doi: 10.1101/gr.089714.108. Epub 2009 Feb 23. Genome Res. 2009. PMID: 19237465 Free PMC article.

3

RsaOG, a new staphylococcal family of highly transcribed non-coding RNA.

Marchais A, Bohn C, Bouloc P, Gautheret D. Marchais A, et al. Among authors: gautheret d. RNA Biol. 2010 Mar-Apr;7(2):116-9. doi: 10.4161/rna.7.2.10925. Epub 2010 Mar 9. RNA Biol. 2010. PMID: 20200491 Free article.

4

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism.

Bohn C, Rigoulay C, Chabelskaya S, Sharma CM, Marchais A, Skorski P, Borezée-Durant E, Barbet R, Jacquet E, Jacq A, Gautheret D, Felden B, Vogel J, Bouloc P. Bohn C, et al. Among authors: gautheret d. Nucleic Acids Res. 2010 Oct;38(19):6620-36. doi: 10.1093/nar/gkq462. Epub 2010 May 28. Nucleic Acids Res. 2010. PMID: 20511587 Free PMC article.

5

Plant noncoding RNA gene discovery by "single-genome comparative genomics".

Chen CJ, Zhou H, Chen YQ, Qu LH, Gautheret D. Chen CJ, et al. Among authors: gautheret d. RNA. 2011 Mar;17(3):390-400. doi: 10.1261/rna.2426511. Epub 2011 Jan 10. RNA. 2011. PMID: 21220549 Free PMC article.

6

Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus.

Toffano-Nioche C, Nguyen AN, Kuchly C, Ott A, Gautheret D, Bouloc P, Jacq A. Toffano-Nioche C, et al. Among authors: gautheret d. RNA. 2012 Dec;18(12):2201-19. doi: 10.1261/rna.033324.112. Epub 2012 Oct 24. RNA. 2012. PMID: 23097430 Free PMC article.

7

Zinc-mediated RNA fragmentation allows robust transcript reassembly upon whole transcriptome RNA-Seq.

Wery M, Descrimes M, Thermes C, Gautheret D, Morillon A. Wery M, et al. Among authors: gautheret d. Methods. 2013 Sep 1;63(1):25-31. doi: 10.1016/j.ymeth.2013.03.009. Epub 2013 Mar 21. Methods. 2013. PMID: 23523657

8

RNA at 92 °C: the non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi.

Toffano-Nioche C, Ott A, Crozat E, Nguyen AN, Zytnicki M, Leclerc F, Forterre P, Bouloc P, Gautheret D. Toffano-Nioche C, et al. Among authors: gautheret d. RNA Biol. 2013 Jul;10(7):1211-20. doi: 10.4161/rna.25567. Epub 2013 Jul 2. RNA Biol. 2013. PMID: 23884177 Free PMC article.

9

Genome-wide translational changes induced by the prion [PSI+].

Baudin-Baillieu A, Legendre R, Kuchly C, Hatin I, Demais S, Mestdagh C, Gautheret D, Namy O. Baudin-Baillieu A, et al. Among authors: gautheret d. Cell Rep. 2014 Jul 24;8(2):439-48. doi: 10.1016/j.celrep.2014.06.036. Epub 2014 Jul 17. Cell Rep. 2014. PMID: 25043188 Free article.

10

An assessment of bacterial small RNA target prediction programs.

Pain A, Ott A, Amine H, Rochat T, Bouloc P, Gautheret D. Pain A, et al. Among authors: gautheret d. RNA Biol. 2015;12(5):509-13. doi: 10.1080/15476286.2015.1020269. RNA Biol. 2015. PMID: 25760244 Free PMC article. Review.

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