Ku M - Search Results

1

In silico abstraction of zinc finger nuclease cleavage profiles reveals an expanded landscape of off-target sites.

Sander JD, Ramirez CL, Linder SJ, Pattanayak V, Shoresh N, Ku M, Foden JA, Reyon D, Bernstein BE, Liu DR, Joung JK. Sander JD, et al. Among authors: ku m. Nucleic Acids Res. 2013 Oct;41(19):e181. doi: 10.1093/nar/gkt716. Epub 2013 Aug 14. Nucleic Acids Res. 2013. PMID: 23945932 Free PMC article.

2

Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA.

Goren A, Ozsolak F, Shoresh N, Ku M, Adli M, Hart C, Gymrek M, Zuk O, Regev A, Milos PM, Bernstein BE. Goren A, et al. Among authors: ku m. Nat Methods. 2010 Jan;7(1):47-9. doi: 10.1038/nmeth.1404. Epub 2009 Nov 29. Nat Methods. 2010. PMID: 19946276 Free PMC article.

3

Mapping and analysis of chromatin state dynamics in nine human cell types.

Ernst J, Kheradpour P, Mikkelsen TS, Shoresh N, Ward LD, Epstein CB, Zhang X, Wang L, Issner R, Coyne M, Ku M, Durham T, Kellis M, Bernstein BE. Ernst J, et al. Among authors: ku m. Nature. 2011 May 5;473(7345):43-9. doi: 10.1038/nature09906. Epub 2011 Mar 23. Nature. 2011. PMID: 21441907 Free PMC article.

4

Jarid2 and PRC2, partners in regulating gene expression.

Li G, Margueron R, Ku M, Chambon P, Bernstein BE, Reinberg D. Li G, et al. Among authors: ku m. Genes Dev. 2010 Feb 15;24(4):368-80. doi: 10.1101/gad.1886410. Epub 2010 Feb 1. Genes Dev. 2010. PMID: 20123894 Free PMC article.

5

In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state.

Wernig M, Meissner A, Foreman R, Brambrink T, Ku M, Hochedlinger K, Bernstein BE, Jaenisch R. Wernig M, et al. Among authors: ku m. Nature. 2007 Jul 19;448(7151):318-24. doi: 10.1038/nature05944. Epub 2007 Jun 6. Nature. 2007. PMID: 17554336

6

GC-rich sequence elements recruit PRC2 in mammalian ES cells.

Mendenhall EM, Koche RP, Truong T, Zhou VW, Issac B, Chi AS, Ku M, Bernstein BE. Mendenhall EM, et al. Among authors: ku m. PLoS Genet. 2010 Dec 9;6(12):e1001244. doi: 10.1371/journal.pgen.1001244. PLoS Genet. 2010. PMID: 21170310 Free PMC article.

7

Reprogramming factor expression initiates widespread targeted chromatin remodeling.

Koche RP, Smith ZD, Adli M, Gu H, Ku M, Gnirke A, Bernstein BE, Meissner A. Koche RP, et al. Among authors: ku m. Cell Stem Cell. 2011 Jan 7;8(1):96-105. doi: 10.1016/j.stem.2010.12.001. Cell Stem Cell. 2011. PMID: 21211784 Free PMC article.

8

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.

Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, Xie X, Meissner A, Wernig M, Jaenisch R, Nusbaum C, Lander ES, Bernstein BE. Mikkelsen TS, et al. Among authors: ku m. Nature. 2007 Aug 2;448(7153):553-60. doi: 10.1038/nature06008. Epub 2007 Jul 1. Nature. 2007. PMID: 17603471 Free PMC article.

9

Dissecting direct reprogramming through integrative genomic analysis.

Mikkelsen TS, Hanna J, Zhang X, Ku M, Wernig M, Schorderet P, Bernstein BE, Jaenisch R, Lander ES, Meissner A. Mikkelsen TS, et al. Among authors: ku m. Nature. 2008 Jul 3;454(7200):49-55. doi: 10.1038/nature07056. Epub 2008 May 28. Nature. 2008. PMID: 18509334 Free PMC article.

10

Wilms tumor chromatin profiles highlight stem cell properties and a renal developmental network.

Aiden AP, Rivera MN, Rheinbay E, Ku M, Coffman EJ, Truong TT, Vargas SO, Lander ES, Haber DA, Bernstein BE. Aiden AP, et al. Among authors: ku m. Cell Stem Cell. 2010 Jun 4;6(6):591-602. doi: 10.1016/j.stem.2010.03.016. Cell Stem Cell. 2010. PMID: 20569696 Free PMC article.

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