Lundberg DS - Search Results

1

Practical innovations for high-throughput amplicon sequencing.

Lundberg DS, Yourstone S, Mieczkowski P, Jones CD, Dangl JL. Lundberg DS, et al. Nat Methods. 2013 Oct;10(10):999-1002. doi: 10.1038/nmeth.2634. Epub 2013 Sep 1. Nat Methods. 2013. PMID: 23995388

2

The Pseudomonas syringae type III effector HopAM1 enhances virulence on water-stressed plants.

Goel AK, Lundberg D, Torres MA, Matthews R, Akimoto-Tomiyama C, Farmer L, Dangl JL, Grant SR. Goel AK, et al. Mol Plant Microbe Interact. 2008 Mar;21(3):361-70. doi: 10.1094/MPMI-21-3-0361. Mol Plant Microbe Interact. 2008. PMID: 18257685 Free article.

3

Defining the core Arabidopsis thaliana root microbiome.

Lundberg DS, Lebeis SL, Paredes SH, Yourstone S, Gehring J, Malfatti S, Tremblay J, Engelbrektson A, Kunin V, Del Rio TG, Edgar RC, Eickhorst T, Ley RE, Hugenholtz P, Tringe SG, Dangl JL. Lundberg DS, et al. Nature. 2012 Aug 2;488(7409):86-90. doi: 10.1038/nature11237. Nature. 2012. PMID: 22859206 Free PMC article.

4

Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative.

Wagner MR, Lundberg DS, Coleman-Derr D, Tringe SG, Dangl JL, Mitchell-Olds T. Wagner MR, et al. Among authors: lundberg ds. Ecol Lett. 2014 Jun;17(6):717-26. doi: 10.1111/ele.12276. Epub 2014 Apr 4. Ecol Lett. 2014. PMID: 24698177 Free PMC article.

5

MT-Toolbox: improved amplicon sequencing using molecule tags.

Yourstone SM, Lundberg DS, Dangl JL, Jones CD. Yourstone SM, et al. Among authors: lundberg ds. BMC Bioinformatics. 2014 Aug 22;15(1):284. doi: 10.1186/1471-2105-15-284. BMC Bioinformatics. 2014. PMID: 25149069 Free PMC article.

6

PLANT MICROBIOME. Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa.

Lebeis SL, Paredes SH, Lundberg DS, Breakfield N, Gehring J, McDonald M, Malfatti S, Glavina del Rio T, Jones CD, Tringe SG, Dangl JL. Lebeis SL, et al. Among authors: lundberg ds. Science. 2015 Aug 21;349(6250):860-4. doi: 10.1126/science.aaa8764. Epub 2015 Jul 16. Science. 2015. PMID: 26184915

7

Learning Microbial Interaction Networks from Metagenomic Count Data.

Biswas S, Mcdonald M, Lundberg DS, Dangl JL, Jojic V. Biswas S, et al. Among authors: lundberg ds. J Comput Biol. 2016 Jun;23(6):526-35. doi: 10.1089/cmb.2016.0061. J Comput Biol. 2016. PMID: 27267776

8

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant.

Wagner MR, Lundberg DS, Del Rio TG, Tringe SG, Dangl JL, Mitchell-Olds T. Wagner MR, et al. Among authors: lundberg ds. Nat Commun. 2016 Jul 12;7:12151. doi: 10.1038/ncomms12151. Nat Commun. 2016. PMID: 27402057 Free PMC article.

9

Genomic features of bacterial adaptation to plants.

Levy A, Salas Gonzalez I, Mittelviefhaus M, Clingenpeel S, Herrera Paredes S, Miao J, Wang K, Devescovi G, Stillman K, Monteiro F, Rangel Alvarez B, Lundberg DS, Lu TY, Lebeis S, Jin Z, McDonald M, Klein AP, Feltcher ME, Rio TG, Grant SR, Doty SL, Ley RE, Zhao B, Venturi V, Pelletier DA, Vorholt JA, Tringe SG, Woyke T, Dangl JL. Levy A, et al. Among authors: lundberg ds. Nat Genet. 2017 Dec 18;50(1):138-150. doi: 10.1038/s41588-017-0012-9. Nat Genet. 2017. PMID: 29255260 Free PMC article.

10

Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe-microbe interaction networks in plant leaves.

Regalado J, Lundberg DS, Deusch O, Kersten S, Karasov T, Poersch K, Shirsekar G, Weigel D. Regalado J, et al. Among authors: lundberg ds. ISME J. 2020 Aug;14(8):2116-2130. doi: 10.1038/s41396-020-0665-8. Epub 2020 May 13. ISME J. 2020. PMID: 32405027 Free PMC article.

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