Sun S - Search Results

1

Comparing a few SNP calling algorithms using low-coverage sequencing data.

Yu X, Sun S. Yu X, et al. Among authors: sun s. BMC Bioinformatics. 2013 Sep 17;14:274. doi: 10.1186/1471-2105-14-274. BMC Bioinformatics. 2013. PMID: 24044377 Free PMC article.

2

Identifying differentially methylated genes using mixed effect and generalized least square models.

Sun S, Yan PS, Huang TH, Lin S. Sun S, et al. BMC Bioinformatics. 2009 Dec 9;10:404. doi: 10.1186/1471-2105-10-404. BMC Bioinformatics. 2009. PMID: 20003206 Free PMC article.

3

Identifying hypermethylated CpG islands using a quantile regression model.

Sun S, Chen Z, Yan PS, Huang YW, Huang TH, Lin S. Sun S, et al. BMC Bioinformatics. 2011 Feb 15;12:54. doi: 10.1186/1471-2105-12-54. BMC Bioinformatics. 2011. PMID: 21324121 Free PMC article.

4

How do alignment programs perform on sequencing data with varying qualities and from repetitive regions?

Yu X, Guda K, Willis J, Veigl M, Wang Z, Markowitz S, Adams MD, Sun S. Yu X, et al. Among authors: sun s. BioData Min. 2012 Jun 18;5(1):6. doi: 10.1186/1756-0381-5-6. BioData Min. 2012. PMID: 22709551 Free PMC article.

5

Global mutational profiling of formalin-fixed human colon cancers from a pathology archive.

Adams MD, Veigl ML, Wang Z, Molyneux N, Sun S, Guda K, Yu X, Markowitz SD, Willis J. Adams MD, et al. Among authors: sun s. Mod Pathol. 2012 Dec;25(12):1599-608. doi: 10.1038/modpathol.2012.121. Epub 2012 Aug 10. Mod Pathol. 2012. PMID: 22878650 Free PMC article.

6

MethyQA: a pipeline for bisulfite-treated methylation sequencing quality assessment.

Sun S, Noviski A, Yu X. Sun S, et al. BMC Bioinformatics. 2013 Aug 23;14:259. doi: 10.1186/1471-2105-14-259. BMC Bioinformatics. 2013. PMID: 23968174 Free PMC article.

7

HMM-Fisher: identifying differential methylation using a hidden Markov model and Fisher's exact test.

Sun S, Yu X. Sun S, et al. Stat Appl Genet Mol Biol. 2016 Mar;15(1):55-67. doi: 10.1515/sagmb-2015-0076. Stat Appl Genet Mol Biol. 2016. PMID: 26854292 Free article.

8

HMM-DM: identifying differentially methylated regions using a hidden Markov model.

Yu X, Sun S. Yu X, et al. Among authors: sun s. Stat Appl Genet Mol Biol. 2016 Mar;15(1):69-81. doi: 10.1515/sagmb-2015-0077. Stat Appl Genet Mol Biol. 2016. PMID: 26887041

9

Comparing five statistical methods of differential methylation identification using bisulfite sequencing data.

Yu X, Sun S. Yu X, et al. Among authors: sun s. Stat Appl Genet Mol Biol. 2016 Apr;15(2):173-91. doi: 10.1515/sagmb-2015-0078. Stat Appl Genet Mol Biol. 2016. PMID: 26910753

10

Statistical and bioinformatic analysis of hemimethylation patterns in non-small cell lung cancer.

Sun S, Zane A, Fulton C, Philipoom J. Sun S, et al. BMC Cancer. 2021 Mar 12;21(1):268. doi: 10.1186/s12885-021-07990-7. BMC Cancer. 2021. PMID: 33711952 Free PMC article.

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