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306 results

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Assessment of transcript reconstruction methods for RNA-seq.
Steijger T, Abril JF, Engström PG, Kokocinski F; RGASP Consortium; Hubbard TJ, Guigó R, Harrow J, Bertone P. Steijger T, et al. Among authors: guigo r. Nat Methods. 2013 Dec;10(12):1177-84. doi: 10.1038/nmeth.2714. Epub 2013 Nov 3. Nat Methods. 2013. PMID: 24185837 Free PMC article.
Long non-coding RNAs involved in Drosophila development and regeneration.
Camilleri-Robles C, Amador R, Tiebe M, Teleman AA, Serras F, Guigó R, Corominas M. Camilleri-Robles C, et al. Among authors: guigo r. NAR Genom Bioinform. 2024 Aug 16;6(3):lqae091. doi: 10.1093/nargab/lqae091. eCollection 2024 Sep. NAR Genom Bioinform. 2024. PMID: 39157585 Free PMC article.
The Catalan initiative for the Earth BioGenome Project: contributing local data to global biodiversity genomics.
Corominas M, Marquès-Bonet T, Arnedo MA, Bayés M, Belmonte J, Escrivà H, Fernández R, Gabaldón T, Garnatje T, Germain J, Niell M, Palero F, Pons J, Puigdomènech P, Initiative For The Earth BioGenome Project TC; Catalan initiative for the Earth BioGenome Project; Arroyo V, Cuevas-Caballé C, Obiol JF, Gut I, Gut M, Hidalgo O, Izquierdo-Arànega G, Pérez-Sorribes L, Righi E, Riutort M, Vallès J, Rozas J, Alioto T, Guigó R. Corominas M, et al. Among authors: guigo r. NAR Genom Bioinform. 2024 Jul 17;6(3):lqae075. doi: 10.1093/nargab/lqae075. eCollection 2024 Sep. NAR Genom Bioinform. 2024. PMID: 39022326 Free PMC article.
Putting hornets on the genomic map.
Favreau E, Cini A, Taylor D, Câmara Ferreira F, Bentley MA, Cappa F, Cervo R, Privman E, Schneider J, Thiéry D, Mashoodh R, Wyatt CDR, Brown RL, Bodrug-Schepers A, Stralis-Pavese N, Dohm JC, Mead D, Himmelbauer H, Guigo R, Sumner S. Favreau E, et al. Among authors: guigo r. Sci Rep. 2023 Apr 21;13(1):6232. doi: 10.1038/s41598-023-31932-x. Sci Rep. 2023. PMID: 37085574 Free PMC article.
Data sharing ethics toolkit: The Human Cell Atlas.
Kirby E, Bernier A, Guigó R, Wold B, Arzuaga F, Kusunose M, Zawati M, Knoppers BM. Kirby E, et al. Among authors: guigo r. Nat Commun. 2024 Nov 20;15(1):9901. doi: 10.1038/s41467-024-54300-3. Nat Commun. 2024. PMID: 39567529 Free PMC article. Review.
The commitment of the human cell atlas to humanity.
Amit I, Ardlie K, Arzuaga F, Awandare G, Bader G, Bernier A, Carninci P, Donnelly S, Eils R, Forrest ARR, Greely HT, Guigo R, Hacohen N, Haniffa M, Kirby ES, Knoppers BM, Kriegstein A, Lein ES, Linnarsson S, Majumder PP, Merad M, Meyer K, Mhlanga MM, Nolan G, Ntusi NAB, Pe'er D, Prabhakar S, Raven-Adams M, Regev A, Rozenblatt-Rosen O, Saha S, Saltzman A, Shalek AK, Shin JW, Stunnenberg H, Teichmann SA, Tickle T, Villani AC, Wells C, Wold B, Yang H, Zhuang X. Amit I, et al. Among authors: guigo r. Nat Commun. 2024 Nov 20;15(1):10019. doi: 10.1038/s41467-024-54306-x. Nat Commun. 2024. PMID: 39567491 Free PMC article. Review.
GENCODE 2025: reference gene annotation for human and mouse.
Mudge JM, Carbonell-Sala S, Diekhans M, Martinez JG, Hunt T, Jungreis I, Loveland JE, Arnan C, Barnes I, Bennett R, Berry A, Bignell A, Cerdán-Vélez D, Cochran K, Cortés LT, Davidson C, Donaldson S, Dursun C, Fatima R, Hardy M, Hebbar P, Hollis Z, James BT, Jiang Y, Johnson R, Kaur G, Kay M, Mangan RJ, Maquedano M, Gómez LM, Mathlouthi N, Merritt R, Ni P, Palumbo E, Perteghella T, Pozo F, Raj S, Sisu C, Steed E, Sumathipala D, Suner MM, Uszczynska-Ratajczak B, Wass E, Yang YT, Zhang D, Finn RD, Gerstein M, Guigó R, Hubbard TJP, Kellis M, Kundaje A, Paten B, Tress ML, Birney E, Martin FJ, Frankish A. Mudge JM, et al. Among authors: guigo r. Nucleic Acids Res. 2024 Nov 20:gkae1078. doi: 10.1093/nar/gkae1078. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39565199
306 results