Mendoza-Parra MA - Search Results

1

Characterising ChIP-seq binding patterns by model-based peak shape deconvolution.

Mendoza-Parra MA, Nowicka M, Van Gool W, Gronemeyer H. Mendoza-Parra MA, et al. BMC Genomics. 2013 Nov 26;14(1):834. doi: 10.1186/1471-2164-14-834. BMC Genomics. 2013. PMID: 24279297 Free PMC article.

2

Single-tube linear DNA amplification (LinDA) for robust ChIP-seq.

Shankaranarayanan P, Mendoza-Parra MA, Walia M, Wang L, Li N, Trindade LM, Gronemeyer H. Shankaranarayanan P, et al. Nat Methods. 2011 Jun 5;8(7):565-7. doi: 10.1038/nmeth.1626. Nat Methods. 2011. PMID: 21642965

3

Dissecting the retinoid-induced differentiation of F9 embryonal stem cells by integrative genomics.

Mendoza-Parra MA, Walia M, Sankar M, Gronemeyer H. Mendoza-Parra MA, et al. Mol Syst Biol. 2011 Oct 11;7:538. doi: 10.1038/msb.2011.73. Mol Syst Biol. 2011. PMID: 21988834 Free PMC article.

4

POLYPHEMUS: R package for comparative analysis of RNA polymerase II ChIP-seq profiles by non-linear normalization.

Mendoza-Parra MA, Sankar M, Walia M, Gronemeyer H. Mendoza-Parra MA, et al. Nucleic Acids Res. 2012 Feb;40(4):e30. doi: 10.1093/nar/gkr1205. Epub 2011 Dec 7. Nucleic Acids Res. 2012. PMID: 22156059 Free PMC article.

5

Single-tube linear DNA amplification for genome-wide studies using a few thousand cells.

Shankaranarayanan P, Mendoza-Parra MA, van Gool W, Trindade LM, Gronemeyer H. Shankaranarayanan P, et al. Nat Protoc. 2012 Jan 26;7(2):328-38. doi: 10.1038/nprot.2011.447. Nat Protoc. 2012. PMID: 22281868

6

Genome-wide studies of nuclear receptors in cell fate decisions.

Mendoza-Parra MA, Gronemeyer H. Mendoza-Parra MA, et al. Semin Cell Dev Biol. 2013 Dec;24(10-12):706-15. doi: 10.1016/j.semcdb.2013.07.001. Epub 2013 Aug 2. Semin Cell Dev Biol. 2013. PMID: 23916718 Review.

7

A quality control system for profiles obtained by ChIP sequencing.

Mendoza-Parra MA, Van Gool W, Mohamed Saleem MA, Ceschin DG, Gronemeyer H. Mendoza-Parra MA, et al. Nucleic Acids Res. 2013 Nov;41(21):e196. doi: 10.1093/nar/gkt829. Epub 2013 Sep 14. Nucleic Acids Res. 2013. PMID: 24038469 Free PMC article.

8

Senescence-secreted factors activate Myc and sensitize pretransformed cells to TRAIL-induced apoptosis.

Vjetrovic J, Shankaranarayanan P, Mendoza-Parra MA, Gronemeyer H. Vjetrovic J, et al. Aging Cell. 2014 Jun;13(3):487-96. doi: 10.1111/acel.12197. Epub 2014 Mar 4. Aging Cell. 2014. PMID: 24589226 Free PMC article.

9

Integrative genomics to dissect retinoid functions.

Mendoza-Parra MA, Gronemeyer H. Mendoza-Parra MA, et al. Subcell Biochem. 2014;70:181-202. doi: 10.1007/978-94-017-9050-5_9. Subcell Biochem. 2014. PMID: 24962886 Review.

10

The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer.

Chaligné R, Popova T, Mendoza-Parra MA, Saleem MA, Gentien D, Ban K, Piolot T, Leroy O, Mariani O, Gronemeyer H, Vincent-Salomon A, Stern MH, Heard E. Chaligné R, et al. Genome Res. 2015 Apr;25(4):488-503. doi: 10.1101/gr.185926.114. Epub 2015 Feb 4. Genome Res. 2015. PMID: 25653311 Free PMC article.

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