Pontiggia F - Search Results

1

Evidence against the "Y-T coupling" mechanism of activation in the response regulator NtrC.

Villali J, Pontiggia F, Clarkson MW, Hagan MF, Kern D. Villali J, et al. Among authors: pontiggia f. J Mol Biol. 2014 Apr 3;426(7):1554-67. doi: 10.1016/j.jmb.2013.12.027. Epub 2014 Jan 7. J Mol Biol. 2014. PMID: 24406745 Free PMC article.

2

Free energy landscape of activation in a signalling protein at atomic resolution.

Pontiggia F, Pachov DV, Clarkson MW, Villali J, Hagan MF, Pande VS, Kern D. Pontiggia F, et al. Nat Commun. 2015 Jun 15;6:7284. doi: 10.1038/ncomms8284. Nat Commun. 2015. PMID: 26073309 Free PMC article.

3

The energy landscape of adenylate kinase during catalysis.

Kerns SJ, Agafonov RV, Cho YJ, Pontiggia F, Otten R, Pachov DV, Kutter S, Phung LA, Murphy PN, Thai V, Alber T, Hagan MF, Kern D. Kerns SJ, et al. Among authors: pontiggia f. Nat Struct Mol Biol. 2015 Feb;22(2):124-31. doi: 10.1038/nsmb.2941. Epub 2015 Jan 12. Nat Struct Mol Biol. 2015. PMID: 25580578 Free PMC article.

4

Molecular mechanism of Aurora A kinase autophosphorylation and its allosteric activation by TPX2.

Zorba A, Buosi V, Kutter S, Kern N, Pontiggia F, Cho YJ, Kern D. Zorba A, et al. Among authors: pontiggia f. Elife. 2014 May 27;3:e02667. doi: 10.7554/eLife.02667. Elife. 2014. PMID: 24867643 Free PMC article.

5

Conformational Selection in a Protein-Protein Interaction Revealed by Dynamic Pathway Analysis.

Chakrabarti KS, Agafonov RV, Pontiggia F, Otten R, Higgins MK, Schertler GFX, Oprian DD, Kern D. Chakrabarti KS, et al. Among authors: pontiggia f. Cell Rep. 2016 Jan 5;14(1):32-42. doi: 10.1016/j.celrep.2015.12.010. Epub 2015 Dec 24. Cell Rep. 2016. PMID: 26725117 Free PMC article.

6

Small- and large-scale conformational changes of adenylate kinase: a molecular dynamics study of the subdomain motion and mechanics.

Pontiggia F, Zen A, Micheletti C. Pontiggia F, et al. Biophys J. 2008 Dec 15;95(12):5901-12. doi: 10.1529/biophysj.108.135467. Epub 2008 Oct 17. Biophys J. 2008. PMID: 18931260 Free PMC article.

7

Coarse-grained description of protein internal dynamics: an optimal strategy for decomposing proteins in rigid subunits.

Potestio R, Pontiggia F, Micheletti C. Potestio R, et al. Among authors: pontiggia f. Biophys J. 2009 Jun 17;96(12):4993-5002. doi: 10.1016/j.bpj.2009.03.051. Biophys J. 2009. PMID: 19527659 Free PMC article.

8

Anharmonicity and self-similarity of the free energy landscape of protein G.

Pontiggia F, Colombo G, Micheletti C, Orland H. Pontiggia F, et al. Phys Rev Lett. 2007 Jan 26;98(4):048102. doi: 10.1103/PhysRevLett.98.048102. Epub 2007 Jan 24. Phys Rev Lett. 2007. PMID: 17358816

9

ALADYN: a web server for aligning proteins by matching their large-scale motion.

Potestio R, Aleksiev T, Pontiggia F, Cozzini S, Micheletti C. Potestio R, et al. Among authors: pontiggia f. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W41-5. doi: 10.1093/nar/gkq293. Epub 2010 May 5. Nucleic Acids Res. 2010. PMID: 20444876 Free PMC article.

10

Essential dynamics of helices provide a functional classification of EF-hand proteins.

Capozzi F, Luchinat C, Micheletti C, Pontiggia F. Capozzi F, et al. Among authors: pontiggia f. J Proteome Res. 2007 Nov;6(11):4245-55. doi: 10.1021/pr070314m. Epub 2007 Oct 13. J Proteome Res. 2007. PMID: 17935310

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