Brown JM - Search Results

1

Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit.

Brown JM. Brown JM. Syst Biol. 2014 May;63(3):334-48. doi: 10.1093/sysbio/syu002. Epub 2014 Jan 11. Syst Biol. 2014. PMID: 24415681

2

The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics.

Brown JM, Lemmon AR. Brown JM, et al. Syst Biol. 2007 Aug;56(4):643-55. doi: 10.1080/10635150701546249. Syst Biol. 2007. PMID: 17661232

3

The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference.

Lemmon AR, Brown JM, Stanger-Hall K, Lemmon EM. Lemmon AR, et al. Among authors: brown jm. Syst Biol. 2009 Feb;58(1):130-45. doi: 10.1093/sysbio/syp017. Epub 2009 May 22. Syst Biol. 2009. PMID: 20525573 Free PMC article.

4

When trees grow too long: investigating the causes of highly inaccurate bayesian branch-length estimates.

Brown JM, Hedtke SM, Lemmon AR, Lemmon EM. Brown JM, et al. Syst Biol. 2010 Mar;59(2):145-61. doi: 10.1093/sysbio/syp081. Epub 2009 Dec 10. Syst Biol. 2010. PMID: 20525627

5

Poor fit to the multispecies coalescent is widely detectable in empirical data.

Reid NM, Hird SM, Brown JM, Pelletier TA, McVay JD, Satler JD, Carstens BC. Reid NM, et al. Among authors: brown jm. Syst Biol. 2014 May;63(3):322-33. doi: 10.1093/sysbio/syt057. Epub 2013 Aug 28. Syst Biol. 2014. PMID: 23985785

6

Predictive approaches to assessing the fit of evolutionary models.

Brown JM. Brown JM. Syst Biol. 2014 May;63(3):289-92. doi: 10.1093/sysbio/syu009. Epub 2014 Feb 21. Syst Biol. 2014. PMID: 24562916 No abstract available.

7

Untangling the influences of unmodeled evolutionary processes on phylogenetic signal in a forensically important HIV-1 transmission cluster.

Doyle VP, Andersen JJ, Nelson BJ, Metzker ML, Brown JM. Doyle VP, et al. Among authors: brown jm. Mol Phylogenet Evol. 2014 Jun;75:126-37. doi: 10.1016/j.ympev.2014.02.022. Epub 2014 Feb 28. Mol Phylogenet Evol. 2014. PMID: 24589520

8

Deflating trees: improving Bayesian branch-length estimates using informed priors.

Nelson BJ, Andersen JJ, Brown JM. Nelson BJ, et al. Among authors: brown jm. Syst Biol. 2015 May;64(3):441-7. doi: 10.1093/sysbio/syv003. Epub 2015 Jan 16. Syst Biol. 2015. PMID: 25595363

9

Can We Identify Genes with Increased Phylogenetic Reliability?

Doyle VP, Young RE, Naylor GJ, Brown JM. Doyle VP, et al. Among authors: brown jm. Syst Biol. 2015 Sep;64(5):824-37. doi: 10.1093/sysbio/syv041. Epub 2015 Jun 22. Syst Biol. 2015. PMID: 26099258

10

EmpPrior: using outside empirical data to inform branch-length priors for Bayesian phylogenetics.

Andersen JJ, Nelson BJ, Brown JM. Andersen JJ, et al. Among authors: brown jm. BMC Bioinformatics. 2016 Jun 24;17:253. doi: 10.1186/s12859-016-1132-4. BMC Bioinformatics. 2016. PMID: 27342194 Free PMC article.

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