Banfield JF - Search Results

1

Genome resolved analysis of a premature infant gut microbial community reveals a Varibaculum cambriense genome and a shift towards fermentation-based metabolism during the third week of life.

Brown CT, Sharon I, Thomas BC, Castelle CJ, Morowitz MJ, Banfield JF. Brown CT, et al. Among authors: banfield jf. Microbiome. 2013 Dec 17;1(1):30. doi: 10.1186/2049-2618-1-30. Microbiome. 2013. PMID: 24451181 Free PMC article.

2

Community-wide analysis of microbial genome sequence signatures.

Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP, Banfield JF. Dick GJ, et al. Among authors: banfield jf. Genome Biol. 2009;10(8):R85. doi: 10.1186/gb-2009-10-8-r85. Epub 2009 Aug 21. Genome Biol. 2009. PMID: 19698104 Free PMC article.

3

Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.

Wilkins MJ, Verberkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan AL, Thomas BC, Nicora CD, Shah MB, Abraham P, Lipton MS, Lovley DR, Hettich RL, Long PE, Banfield JF. Wilkins MJ, et al. Among authors: banfield jf. Appl Environ Microbiol. 2009 Oct;75(20):6591-9. doi: 10.1128/AEM.01064-09. Epub 2009 Aug 28. Appl Environ Microbiol. 2009. PMID: 19717633 Free PMC article.

4

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities.

Denef VJ, Kalnejais LH, Mueller RS, Wilmes P, Baker BJ, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF. Denef VJ, et al. Among authors: banfield jf. Proc Natl Acad Sci U S A. 2010 Feb 9;107(6):2383-90. doi: 10.1073/pnas.0907041107. Epub 2010 Feb 2. Proc Natl Acad Sci U S A. 2010. PMID: 20133593 Free PMC article.

5

Ecological distribution and population physiology defined by proteomics in a natural microbial community.

Mueller RS, Denef VJ, Kalnejais LH, Suttle KB, Thomas BC, Wilmes P, Smith RL, Nordstrom DK, McCleskey RB, Shah MB, Verberkmoes NC, Hettich RL, Banfield JF. Mueller RS, et al. Among authors: banfield jf. Mol Syst Biol. 2010 Jun 8;6:374. doi: 10.1038/msb.2010.30. Mol Syst Biol. 2010. PMID: 20531404 Free PMC article.

6

Metabolome-proteome differentiation coupled to microbial divergence.

Wilmes P, Bowen BP, Thomas BC, Mueller RS, Denef VJ, VerBerkmoes NC, Hettich RL, Northen TR, Banfield JF. Wilmes P, et al. Among authors: banfield jf. mBio. 2010 Oct 26;1(5):e00246-10. doi: 10.1128/mBio.00246-10. mBio. 2010. PMID: 20978538 Free PMC article.

7

Strain-resolved community genomic analysis of gut microbial colonization in a premature infant.

Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V, Relman DA, Banfield JF. Morowitz MJ, et al. Among authors: banfield jf. Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1128-33. doi: 10.1073/pnas.1010992108. Epub 2010 Dec 29. Proc Natl Acad Sci U S A. 2011. PMID: 21191099 Free PMC article.

8

Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community.

Mueller RS, Dill BD, Pan C, Belnap CP, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF. Mueller RS, et al. Among authors: banfield jf. Environ Microbiol. 2011 Aug;13(8):2279-92. doi: 10.1111/j.1462-2920.2011.02486.x. Epub 2011 Apr 25. Environ Microbiol. 2011. PMID: 21518216

9

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data.

Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF. Miller CS, et al. Among authors: banfield jf. Genome Biol. 2011;12(5):R44. doi: 10.1186/gb-2011-12-5-r44. Epub 2011 May 19. Genome Biol. 2011. PMID: 21595876 Free PMC article.

10

A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes.

Yelton AP, Thomas BC, Simmons SL, Wilmes P, Zemla A, Thelen MP, Justice N, Banfield JF. Yelton AP, et al. Among authors: banfield jf. PLoS Comput Biol. 2011 Oct;7(10):e1002230. doi: 10.1371/journal.pcbi.1002230. Epub 2011 Oct 20. PLoS Comput Biol. 2011. PMID: 22028637 Free PMC article.

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