Bonvin AM - Search Results

1

Insight into cyanobacterial circadian timing from structural details of the KaiB-KaiC interaction.

Snijder J, Burnley RJ, Wiegard A, Melquiond AS, Bonvin AM, Axmann IM, Heck AJ. Snijder J, et al. Among authors: bonvin am. Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1379-84. doi: 10.1073/pnas.1314326111. Epub 2014 Jan 13. Proc Natl Acad Sci U S A. 2014. PMID: 24474762 Free PMC article.

2

Crystal structure and catalytic mechanism of the LPS 3-O-deacylase PagL from Pseudomonas aeruginosa.

Rutten L, Geurtsen J, Lambert W, Smolenaers JJ, Bonvin AM, de Haan A, van der Ley P, Egmond MR, Gros P, Tommassen J. Rutten L, et al. Among authors: bonvin am. Proc Natl Acad Sci U S A. 2006 May 2;103(18):7071-6. doi: 10.1073/pnas.0509392103. Epub 2006 Apr 21. Proc Natl Acad Sci U S A. 2006. PMID: 16632613 Free PMC article.

3

Active-site architecture and catalytic mechanism of the lipid A deacylase LpxR of Salmonella typhimurium.

Rutten L, Mannie JP, Stead CM, Raetz CR, Reynolds CM, Bonvin AM, Tommassen JP, Egmond MR, Trent MS, Gros P. Rutten L, et al. Among authors: bonvin am. Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1960-4. doi: 10.1073/pnas.0813064106. Epub 2009 Jan 27. Proc Natl Acad Sci U S A. 2009. PMID: 19174515 Free PMC article.

4

Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server.

Karaca E, Melquiond AS, de Vries SJ, Kastritis PL, Bonvin AM. Karaca E, et al. Among authors: bonvin am. Mol Cell Proteomics. 2010 Aug;9(8):1784-94. doi: 10.1074/mcp.M000051-MCP201. Epub 2010 Mar 19. Mol Cell Proteomics. 2010. PMID: 20305088 Free PMC article.

5

Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.

de Vries SJ, Melquiond AS, Kastritis PL, Karaca E, Bordogna A, van Dijk M, Rodrigues JP, Bonvin AM. de Vries SJ, et al. Among authors: bonvin am. Proteins. 2010 Nov 15;78(15):3242-9. doi: 10.1002/prot.22814. Proteins. 2010. PMID: 20718048

6

Clustering biomolecular complexes by residue contacts similarity.

Rodrigues JP, Trellet M, Schmitz C, Kastritis P, Karaca E, Melquiond AS, Bonvin AM. Rodrigues JP, et al. Among authors: bonvin am. Proteins. 2012 Jul;80(7):1810-7. doi: 10.1002/prot.24078. Epub 2012 May 8. Proteins. 2012. PMID: 22489062

7

Supramolecular structure of membrane-associated polypeptides by combining solid-state NMR and molecular dynamics simulations.

Weingarth M, Ader C, Melquiond AS, Nand D, Pongs O, Becker S, Bonvin AM, Baldus M. Weingarth M, et al. Among authors: bonvin am. Biophys J. 2012 Jul 3;103(1):29-37. doi: 10.1016/j.bpj.2012.05.016. Biophys J. 2012. PMID: 22828329 Free PMC article.

8

Dynamic control of selectivity in the ubiquitination pathway revealed by an ASP to GLU substitution in an intra-molecular salt-bridge network.

van Wijk SJ, Melquiond AS, de Vries SJ, Timmers HT, Bonvin AM. van Wijk SJ, et al. Among authors: bonvin am. PLoS Comput Biol. 2012;8(11):e1002754. doi: 10.1371/journal.pcbi.1002754. Epub 2012 Nov 1. PLoS Comput Biol. 2012. PMID: 23133359 Free PMC article.

9

A unified conformational selection and induced fit approach to protein-peptide docking.

Trellet M, Melquiond AS, Bonvin AM. Trellet M, et al. Among authors: bonvin am. PLoS One. 2013;8(3):e58769. doi: 10.1371/journal.pone.0058769. Epub 2013 Mar 13. PLoS One. 2013. PMID: 23516555 Free PMC article.

10

Importance of lipid-pore loop interface for potassium channel structure and function.

van der Cruijsen EA, Nand D, Weingarth M, Prokofyev A, Hornig S, Cukkemane AA, Bonvin AM, Becker S, Hulse RE, Perozo E, Pongs O, Baldus M. van der Cruijsen EA, et al. Among authors: bonvin am. Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):13008-13. doi: 10.1073/pnas.1305563110. Epub 2013 Jul 23. Proc Natl Acad Sci U S A. 2013. PMID: 23882077 Free PMC article.

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