Gruber AJ - Search Results

1

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs.

Balwierz PJ, Pachkov M, Arnold P, Gruber AJ, Zavolan M, van Nimwegen E. Balwierz PJ, et al. Among authors: gruber aj. Genome Res. 2014 May;24(5):869-84. doi: 10.1101/gr.169508.113. Epub 2014 Feb 10. Genome Res. 2014. PMID: 24515121 Free PMC article.

2

Modulation of epigenetic regulators and cell fate decisions by miRNAs.

Gruber AJ, Zavolan M. Gruber AJ, et al. Epigenomics. 2013 Dec;5(6):671-83. doi: 10.2217/epi.13.65. Epigenomics. 2013. PMID: 24283881 Review.

3

Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways.

Gruber AJ, Grandy WA, Balwierz PJ, Dimitrova YA, Pachkov M, Ciaudo C, Nimwegen Ev, Zavolan M. Gruber AJ, et al. Nucleic Acids Res. 2014 Aug;42(14):9313-26. doi: 10.1093/nar/gku544. Epub 2014 Jul 16. Nucleic Acids Res. 2014. PMID: 25030899 Free PMC article.

4

Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells.

Gruber AR, Martin G, Müller P, Schmidt A, Gruber AJ, Gumienny R, Mittal N, Jayachandran R, Pieters J, Keller W, van Nimwegen E, Zavolan M. Gruber AR, et al. Among authors: gruber aj. Nat Commun. 2014 Nov 21;5:5465. doi: 10.1038/ncomms6465. Nat Commun. 2014. PMID: 25413384 Free article.

5

Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data.

Kanitz A, Gypas F, Gruber AJ, Gruber AR, Martin G, Zavolan M. Kanitz A, et al. Among authors: gruber aj, gruber ar. Genome Biol. 2015 Jul 23;16(1):150. doi: 10.1186/s13059-015-0702-5. Genome Biol. 2015. PMID: 26201343 Free PMC article.

6

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.

SIB Swiss Institute of Bioinformatics Members. SIB Swiss Institute of Bioinformatics Members. Nucleic Acids Res. 2016 Jan 4;44(D1):D27-37. doi: 10.1093/nar/gkv1310. Epub 2015 Nov 28. Nucleic Acids Res. 2016. PMID: 26615188 Free PMC article.

7

A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation.

Gruber AJ, Schmidt R, Gruber AR, Martin G, Ghosh S, Belmadani M, Keller W, Zavolan M. Gruber AJ, et al. Among authors: gruber ar. Genome Res. 2016 Aug;26(8):1145-59. doi: 10.1101/gr.202432.115. Epub 2016 Jul 5. Genome Res. 2016. PMID: 27382025 Free PMC article.

8

TFAP2A is a component of the ZEB1/2 network that regulates TGFB1-induced epithelial to mesenchymal transition.

Dimitrova Y, Gruber AJ, Mittal N, Ghosh S, Dimitriades B, Mathow D, Grandy WA, Christofori G, Zavolan M. Dimitrova Y, et al. Among authors: gruber aj. Biol Direct. 2017 Apr 17;12(1):8. doi: 10.1186/s13062-017-0180-7. Biol Direct. 2017. PMID: 28412966 Free PMC article.

9

3' End Sequencing Library Preparation with A-seq2.

Martin G, Schmidt R, Gruber AJ, Ghosh S, Keller W, Zavolan M. Martin G, et al. Among authors: gruber aj. J Vis Exp. 2017 Oct 10;(128):56129. doi: 10.3791/56129. J Vis Exp. 2017. PMID: 29053696 Free PMC article.

10

Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC.

Gruber AJ, Schmidt R, Ghosh S, Martin G, Gruber AR, van Nimwegen E, Zavolan M. Gruber AJ, et al. Among authors: gruber ar. Genome Biol. 2018 Mar 28;19(1):44. doi: 10.1186/s13059-018-1415-3. Genome Biol. 2018. PMID: 29592812 Free PMC article.

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