van Nimwegen E - Search Results

1

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs.

Balwierz PJ, Pachkov M, Arnold P, Gruber AJ, Zavolan M, van Nimwegen E. Balwierz PJ, et al. Among authors: van nimwegen e. Genome Res. 2014 May;24(5):869-84. doi: 10.1101/gr.169508.113. Epub 2014 Feb 10. Genome Res. 2014. PMID: 24515121 Free PMC article.

2

Probabilistic clustering of sequences: inferring new bacterial regulons by comparative genomics.

van Nimwegen E, Zavolan M, Rajewsky N, Siggia ED. van Nimwegen E, et al. Proc Natl Acad Sci U S A. 2002 May 28;99(11):7323-8. doi: 10.1073/pnas.112690399. Proc Natl Acad Sci U S A. 2002. PMID: 12032281 Free PMC article.

3

Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome.

Zavolan M, van Nimwegen E, Gaasterland T. Zavolan M, et al. Among authors: van nimwegen e. Genome Res. 2002 Sep;12(9):1377-85. doi: 10.1101/gr.191702. Genome Res. 2002. PMID: 12213775 Free PMC article.

4

Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes.

Yang E, van Nimwegen E, Zavolan M, Rajewsky N, Schroeder M, Magnasco M, Darnell JE Jr. Yang E, et al. Among authors: van nimwegen e. Genome Res. 2003 Aug;13(8):1863-72. doi: 10.1101/gr.1272403. Genome Res. 2003. PMID: 12902380 Free PMC article.

5

Identification of clustered microRNAs using an ab initio prediction method.

Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M. Sewer A, et al. Among authors: van nimwegen e. BMC Bioinformatics. 2005 Nov 7;6:267. doi: 10.1186/1471-2105-6-267. BMC Bioinformatics. 2005. PMID: 16274478 Free PMC article.

6

SPA: a probabilistic algorithm for spliced alignment.

van Nimwegen E, Paul N, Sheridan R, Zavolan M. van Nimwegen E, et al. PLoS Genet. 2006 Apr;2(4):e24. doi: 10.1371/journal.pgen.0020024. Epub 2006 Apr 28. PLoS Genet. 2006. PMID: 16683023 Free PMC article.

7

A simple physical model predicts small exon length variations.

Chern TM, van Nimwegen E, Kai C, Kawai J, Carninci P, Hayashizaki Y, Zavolan M. Chern TM, et al. Among authors: van nimwegen e. PLoS Genet. 2006 Apr;2(4):e45. doi: 10.1371/journal.pgen.0020045. Epub 2006 Apr 28. PLoS Genet. 2006. PMID: 16683028 Free PMC article.

8

The types and prevalence of alternative splice forms.

Zavolan M, van Nimwegen E. Zavolan M, et al. Among authors: van nimwegen e. Curr Opin Struct Biol. 2006 Jun;16(3):362-7. doi: 10.1016/j.sbi.2006.05.002. Epub 2006 May 18. Curr Opin Struct Biol. 2006. PMID: 16713247 Review.

9

SwissRegulon: a database of genome-wide annotations of regulatory sites.

Pachkov M, Erb I, Molina N, van Nimwegen E. Pachkov M, et al. Among authors: van nimwegen e. Nucleic Acids Res. 2007 Jan;35(Database issue):D127-31. doi: 10.1093/nar/gkl857. Epub 2006 Nov 27. Nucleic Acids Res. 2007. PMID: 17130146 Free PMC article.

10

Inference of miRNA targets using evolutionary conservation and pathway analysis.

Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M. Gaidatzis D, et al. Among authors: van nimwegen e. BMC Bioinformatics. 2007 Mar 1;8:69. doi: 10.1186/1471-2105-8-69. BMC Bioinformatics. 2007. PMID: 17331257 Free PMC article.

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