Rambaut A - Search Results

1

Inferring heterogeneous evolutionary processes through time: from sequence substitution to phylogeography.

Bielejec F, Lemey P, Baele G, Rambaut A, Suchard MA. Bielejec F, et al. Among authors: rambaut a. Syst Biol. 2014 Jul;63(4):493-504. doi: 10.1093/sysbio/syu015. Epub 2014 Mar 12. Syst Biol. 2014. PMID: 24627184 Free PMC article.

2

The molecular population genetics of HIV-1 group O.

Lemey P, Pybus OG, Rambaut A, Drummond AJ, Robertson DL, Roques P, Worobey M, Vandamme AM. Lemey P, et al. Among authors: rambaut a. Genetics. 2004 Jul;167(3):1059-68. doi: 10.1534/genetics.104.026666. Genetics. 2004. PMID: 15280223 Free PMC article.

3

Phylogenetic reconstruction of a known HIV-1 CRF04_cpx transmission network using maximum likelihood and Bayesian methods.

Paraskevis D, Magiorkinis E, Magiorkinis G, Kiosses VG, Lemey P, Vandamme AM, Rambaut A, Hatzakis A. Paraskevis D, et al. Among authors: rambaut a. J Mol Evol. 2004 Nov;59(5):709-17. doi: 10.1007/s00239-004-2651-6. J Mol Evol. 2004. PMID: 15693627

4

Molecular footprint of drug-selective pressure in a human immunodeficiency virus transmission chain.

Lemey P, Derdelinckx I, Rambaut A, Van Laethem K, Dumont S, Vermeulen S, Van Wijngaerden E, Vandamme AM. Lemey P, et al. Among authors: rambaut a. J Virol. 2005 Sep;79(18):11981-9. doi: 10.1128/JVI.79.18.11981-11989.2005. J Virol. 2005. PMID: 16140774 Free PMC article.

5

HIV evolutionary dynamics within and among hosts.

Lemey P, Rambaut A, Pybus OG. Lemey P, et al. Among authors: rambaut a. AIDS Rev. 2006 Jul-Sep;8(3):125-40. AIDS Rev. 2006. PMID: 17078483 Review.

6

Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics.

Lemey P, Kosakovsky Pond SL, Drummond AJ, Pybus OG, Shapiro B, Barroso H, Taveira N, Rambaut A. Lemey P, et al. Among authors: rambaut a. PLoS Comput Biol. 2007 Feb 16;3(2):e29. doi: 10.1371/journal.pcbi.0030029. Epub 2007 Jan 2. PLoS Comput Biol. 2007. PMID: 17305421 Free PMC article.

7

Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form.

Abecasis AB, Lemey P, Vidal N, de Oliveira T, Peeters M, Camacho R, Shapiro B, Rambaut A, Vandamme AM. Abecasis AB, et al. Among authors: rambaut a. J Virol. 2007 Aug;81(16):8543-51. doi: 10.1128/JVI.00463-07. Epub 2007 Jun 6. J Virol. 2007. PMID: 17553886 Free PMC article.

8

Estimating the relative contribution of dNTP pool imbalance and APOBEC3G/3F editing to HIV evolution in vivo.

Deforche K, Camacho R, Laethem KV, Shapiro B, Moreau Y, Rambaut A, Vandamme AM, Lemey P. Deforche K, et al. Among authors: rambaut a. J Comput Biol. 2007 Oct;14(8):1105-14. doi: 10.1089/cmb.2007.0073. J Comput Biol. 2007. PMID: 17985990 Free article.

9

Estimation of an in vivo fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment.

Deforche K, Camacho R, Van Laethem K, Lemey P, Rambaut A, Moreau Y, Vandamme AM. Deforche K, et al. Among authors: rambaut a. Bioinformatics. 2008 Jan 1;24(1):34-41. doi: 10.1093/bioinformatics/btm540. Epub 2007 Nov 17. Bioinformatics. 2008. PMID: 18024973

10

Many-core algorithms for statistical phylogenetics.

Suchard MA, Rambaut A. Suchard MA, et al. Among authors: rambaut a. Bioinformatics. 2009 Jun 1;25(11):1370-6. doi: 10.1093/bioinformatics/btp244. Epub 2009 Apr 15. Bioinformatics. 2009. PMID: 19369496 Free PMC article.

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