Dean JF - Search Results

1

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.

Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, Fuentes-Soriano S, Wu LS, Gilbert D, Marçais G, Roberts M, Holt C, Yandell M, Davis JM, Smith KE, Dean JF, Lorenz WW, Whetten RW, Sederoff R, Wheeler N, McGuire PE, Main D, Loopstra CA, Mockaitis K, deJong PJ, Yorke JA, Salzberg SL, Langley CH. Neale DB, et al. Among authors: dean jf. Genome Biol. 2014 Mar 4;15(3):R59. doi: 10.1186/gb-2014-15-3-r59. Genome Biol. 2014. PMID: 24647006 Free PMC article.

2

SAGE profiling and demonstration of differential gene expression along the axial developmental gradient of lignifying xylem in loblolly pine (Pinus taeda).

Lorenz WW, Dean JF. Lorenz WW, et al. Among authors: dean jf. Tree Physiol. 2002 Apr;22(5):301-10. doi: 10.1093/treephys/22.5.301. Tree Physiol. 2002. PMID: 11960754

3

An improved method of RNA isolation from loblolly pine (P. taeda L.) and other conifer species.

Lorenz WW, Yu YS, Dean JF. Lorenz WW, et al. Among authors: dean jf. J Vis Exp. 2010 Feb 22;(36):1751. doi: 10.3791/1751. J Vis Exp. 2010. PMID: 20177393 Free PMC article.

4

Characterization of a 1-aminocyclopropane-1-carboxylate synthase gene from loblolly pine (Pinus taeda L.).

Barnes JR, Lorenz WW, Dean JF. Barnes JR, et al. Among authors: dean jf. Gene. 2008 Apr 30;413(1-2):18-31. doi: 10.1016/j.gene.2007.12.024. Epub 2008 Jan 24. Gene. 2008. PMID: 18328643

5

Processing the loblolly pine PtGen2 cDNA microarray.

Lorenz WW, Yu YS, Simões M, Dean JF. Lorenz WW, et al. Among authors: dean jf. J Vis Exp. 2009 Mar 20;(25):1182. doi: 10.3791/1182. J Vis Exp. 2009. PMID: 19305380 Free PMC article.

6

Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.).

Lorenz WW, Alba R, Yu YS, Bordeaux JM, Simões M, Dean JF. Lorenz WW, et al. Among authors: dean jf. BMC Genomics. 2011 May 24;12:264. doi: 10.1186/1471-2164-12-264. BMC Genomics. 2011. PMID: 21609476 Free PMC article.

7

The phenylalanine ammonia lyase (PAL) gene family shows a gymnosperm-specific lineage.

Bagal UR, Leebens-Mack JH, Lorenz WW, Dean JF. Bagal UR, et al. Among authors: dean jf. BMC Genomics. 2012 Jun 11;13 Suppl 3(Suppl 3):S1. doi: 10.1186/1471-2164-13-S3-S1. BMC Genomics. 2012. PMID: 22759610 Free PMC article.

8

Biomarker genes highlight intraspecific and interspecific variations in the responses of Pinus taeda L. and Pinus radiata D. Don to Sirex noctilio F. acid gland secretions.

Bordeaux JM, Lorenz WW, Dean JF. Bordeaux JM, et al. Among authors: dean jf. Tree Physiol. 2012 Oct;32(10):1302-12. doi: 10.1093/treephys/tps091. Epub 2012 Oct 5. Tree Physiol. 2012. PMID: 23042767

9

Water stress-responsive genes in loblolly pine (Pinus taeda) roots identified by analyses of expressed sequence tag libraries.

Lorenz WW, Sun F, Liang C, Kolychev D, Wang H, Zhao X, Cordonnier-Pratt MM, Pratt LH, Dean JF. Lorenz WW, et al. Among authors: dean jf. Tree Physiol. 2006 Jan;26(1):1-16. doi: 10.1093/treephys/26.1.1. Tree Physiol. 2006. PMID: 16203709

10

Transcriptomic analysis highlights epigenetic and transcriptional regulation during zygotic embryo development of Pinus pinaster.

de Vega-Bartol JJ, Simões M, Lorenz WW, Rodrigues AS, Alba R, Dean JF, Miguel CM. de Vega-Bartol JJ, et al. Among authors: dean jf. BMC Plant Biol. 2013 Aug 30;13:123. doi: 10.1186/1471-2229-13-123. BMC Plant Biol. 2013. PMID: 23987738 Free PMC article.

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