Heiland RW - Search Results

1

The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents.

Sluka JP, Shirinifard A, Swat M, Cosmanescu A, Heiland RW, Glazier JA. Sluka JP, et al. Among authors: heiland rw. Bioinformatics. 2014 Aug 15;30(16):2367-74. doi: 10.1093/bioinformatics/btu210. Epub 2014 Apr 22. Bioinformatics. 2014. PMID: 24755304 Free PMC article.

2

PhysiCell Studio: a graphical tool to make agent-based modeling more accessible.

Heiland R, Bergman D, Lyons B, Cass J, Rocha HL, Ruscone M, Noël V, Macklin P. Heiland R, et al. bioRxiv [Preprint]. 2023 Dec 14:2023.10.24.563727. doi: 10.1101/2023.10.24.563727. bioRxiv. 2023. Update in: GigaByte. 2024 Jun 19;2024:gigabyte128. doi: 10.46471/gigabyte.128 PMID: 37961612 Free PMC article. Updated. Preprint.

3

Drug-loaded nanoparticles for cancer therapy: a high-throughput multicellular agent-based modeling study.

Wang Y, Bucher E, Rocha H, Jadhao V, Metzcar J, Heiland R, Frieboes HB, Macklin P. Wang Y, et al. bioRxiv [Preprint]. 2024 Jul 25:2024.04.09.588498. doi: 10.1101/2024.04.09.588498. bioRxiv. 2024. PMID: 38645004 Free PMC article. Preprint.

4

Multicell simulations of development and disease using the CompuCell3D simulation environment.

Swat MH, Hester SD, Balter AI, Heiland RW, Zaitlen BL, Glazier JA. Swat MH, et al. Among authors: heiland rw. Methods Mol Biol. 2009;500:361-428. doi: 10.1007/978-1-59745-525-1_13. Methods Mol Biol. 2009. PMID: 19399437 Free PMC article.

5

PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling.

Letort G, Montagud A, Stoll G, Heiland R, Barillot E, Macklin P, Zinovyev A, Calzone L. Letort G, et al. Bioinformatics. 2019 Apr 1;35(7):1188-1196. doi: 10.1093/bioinformatics/bty766. Bioinformatics. 2019. PMID: 30169736 Free PMC article.

6

A Review of Cell-Based Computational Modeling in Cancer Biology.

Metzcar J, Wang Y, Heiland R, Macklin P. Metzcar J, et al. JCO Clin Cancer Inform. 2019 Feb;3:1-13. doi: 10.1200/CCI.18.00069. JCO Clin Cancer Inform. 2019. PMID: 30715927 Free PMC article. Review.

7

Building multiscale models with PhysiBoSS, an agent-based modeling tool.

Ruscone M, Checcoli A, Heiland R, Barillot E, Macklin P, Calzone L, Noël V. Ruscone M, et al. Brief Bioinform. 2024 Sep 23;25(6):bbae509. doi: 10.1093/bib/bbae509. Brief Bioinform. 2024. PMID: 39425527 Free PMC article.

8

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems.

Ghaffarizadeh A, Heiland R, Friedman SH, Mumenthaler SM, Macklin P. Ghaffarizadeh A, et al. PLoS Comput Biol. 2018 Feb 23;14(2):e1005991. doi: 10.1371/journal.pcbi.1005991. eCollection 2018 Feb. PLoS Comput Biol. 2018. PMID: 29474446 Free PMC article.

9

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow.

Ozik J, Collier N, Wozniak JM, Macal C, Cockrell C, Friedman SH, Ghaffarizadeh A, Heiland R, An G, Macklin P. Ozik J, et al. BMC Bioinformatics. 2018 Dec 21;19(Suppl 18):483. doi: 10.1186/s12859-018-2510-x. BMC Bioinformatics. 2018. PMID: 30577742 Free PMC article.

10

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.

HuBMAP Consortium. HuBMAP Consortium. Nature. 2019 Oct;574(7777):187-192. doi: 10.1038/s41586-019-1629-x. Epub 2019 Oct 9. Nature. 2019. PMID: 31597973 Free PMC article.

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