Bird JG - Search Results

1

Interactions between RNA polymerase and the "core recognition element" counteract pausing.

Vvedenskaya IO, Vahedian-Movahed H, Bird JG, Knoblauch JG, Goldman SR, Zhang Y, Ebright RH, Nickels BE. Vvedenskaya IO, et al. Among authors: bird jg. Science. 2014 Jun 13;344(6189):1285-9. doi: 10.1126/science.1253458. Science. 2014. PMID: 24926020 Free PMC article.

2

Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection.

Winkelman JT, Vvedenskaya IO, Zhang Y, Zhang Y, Bird JG, Taylor DM, Gourse RL, Ebright RH, Nickels BE. Winkelman JT, et al. Among authors: bird jg. Science. 2016 Mar 4;351(6277):1090-3. doi: 10.1126/science.aad6881. Science. 2016. PMID: 26941320 Free PMC article.

3

CapZyme-Seq Comprehensively Defines Promoter-Sequence Determinants for RNA 5' Capping with NAD<sup/>

Vvedenskaya IO, Bird JG, Zhang Y, Zhang Y, Jiao X, Barvík I, Krásný L, Kiledjian M, Taylor DM, Ebright RH, Nickels BE. Vvedenskaya IO, et al. Among authors: bird jg. Mol Cell. 2018 May 3;70(3):553-564.e9. doi: 10.1016/j.molcel.2018.03.014. Epub 2018 Apr 19. Mol Cell. 2018. PMID: 29681497 Free PMC article.

4

In transcription antitermination by Qλ, NusA induces refolding of Qλ to form a nozzle that extends the RNA polymerase RNA-exit channel.

Yin Z, Bird JG, Kaelber JT, Nickels BE, Ebright RH. Yin Z, et al. Among authors: bird jg. Proc Natl Acad Sci U S A. 2022 Aug 16;119(33):e2205278119. doi: 10.1073/pnas.2205278119. Epub 2022 Aug 11. Proc Natl Acad Sci U S A. 2022. PMID: 35951650 Free PMC article.

5

RNA Capping by Transcription Initiation with Non-canonical Initiating Nucleotides (NCINs): Determination of Relative Efficiencies of Transcription Initiation with NCINs and NTPs.

Bird JG, Nickels BE, Ebright RH. Bird JG, et al. Bio Protoc. 2017 Jun 20;7(12):e2336. doi: 10.21769/BioProtoc.2336. Bio Protoc. 2017. PMID: 28840175 Free PMC article.

6

"NAD-capQ" detection and quantitation of NAD caps.

Grudzien-Nogalska E, Bird JG, Nickels BE, Kiledjian M. Grudzien-Nogalska E, et al. Among authors: bird jg. RNA. 2018 Oct;24(10):1418-1425. doi: 10.1261/rna.067686.118. Epub 2018 Jul 25. RNA. 2018. PMID: 30045887 Free PMC article.

7

Highly efficient 5' capping of mitochondrial RNA with NAD⁺ and NADH by yeast and human mitochondrial RNA polymerase.

Bird JG, Basu U, Kuster D, Ramachandran A, Grudzien-Nogalska E, Towheed A, Wallace DC, Kiledjian M, Temiakov D, Patel SS, Ebright RH, Nickels BE. Bird JG, et al. Elife. 2018 Dec 12;7:e42179. doi: 10.7554/eLife.42179. Elife. 2018. PMID: 30526856 Free PMC article.

8

The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA.

Bird JG, Zhang Y, Tian Y, Panova N, Barvík I, Greene L, Liu M, Buckley B, Krásný L, Lee JK, Kaplan CD, Ebright RH, Nickels BE. Bird JG, et al. Nature. 2016 Jul 21;535(7612):444-7. doi: 10.1038/nature18622. Epub 2016 Jul 6. Nature. 2016. PMID: 27383794 Free PMC article.

9

5' End Nicotinamide Adenine Dinucleotide Cap in Human Cells Promotes RNA Decay through DXO-Mediated deNADding.

Jiao X, Doamekpor SK, Bird JG, Nickels BE, Tong L, Hart RP, Kiledjian M. Jiao X, et al. Among authors: bird jg. Cell. 2017 Mar 9;168(6):1015-1027.e10. doi: 10.1016/j.cell.2017.02.019. Cell. 2017. PMID: 28283058 Free PMC article.

10

A universal transcription pause sequence is an element of initiation factor σ70-dependent pausing.

Bird JG, Strobel EJ, Roberts JW. Bird JG, et al. Nucleic Acids Res. 2016 Aug 19;44(14):6732-40. doi: 10.1093/nar/gkw285. Epub 2016 Apr 20. Nucleic Acids Res. 2016. PMID: 27098041 Free PMC article.

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