Nickels BE - Search Results

1

Interactions between RNA polymerase and the "core recognition element" counteract pausing.

Vvedenskaya IO, Vahedian-Movahed H, Bird JG, Knoblauch JG, Goldman SR, Zhang Y, Ebright RH, Nickels BE. Vvedenskaya IO, et al. Among authors: nickels be. Science. 2014 Jun 13;344(6189):1285-9. doi: 10.1126/science.1253458. Science. 2014. PMID: 24926020 Free PMC article.

2

A role for interaction of the RNA polymerase flap domain with the sigma subunit in promoter recognition.

Kuznedelov K, Minakhin L, Niedziela-Majka A, Dove SL, Rogulja D, Nickels BE, Hochschild A, Heyduk T, Severinov K. Kuznedelov K, et al. Among authors: nickels be. Science. 2002 Feb 1;295(5556):855-7. doi: 10.1126/science.1066303. Science. 2002. PMID: 11823642

3

The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter.

Nickels BE, Mukhopadhyay J, Garrity SJ, Ebright RH, Hochschild A. Nickels BE, et al. Nat Struct Mol Biol. 2004 Jun;11(6):544-50. doi: 10.1038/nsmb757. Epub 2004 May 2. Nat Struct Mol Biol. 2004. PMID: 15122345

4

The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation.

Nickels BE, Garrity SJ, Mekler V, Minakhin L, Severinov K, Ebright RH, Hochschild A. Nickels BE, et al. Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4488-93. doi: 10.1073/pnas.0409850102. Epub 2005 Mar 10. Proc Natl Acad Sci U S A. 2005. PMID: 15761057 Free PMC article.

5

Genetic assays to define and characterize protein-protein interactions involved in gene regulation.

Nickels BE. Nickels BE. Methods. 2009 Jan;47(1):53-62. doi: 10.1016/j.ymeth.2008.10.011. Epub 2008 Oct 24. Methods. 2009. PMID: 18952173 Review.

6

Direct detection of abortive RNA transcripts in vivo.

Goldman SR, Ebright RH, Nickels BE. Goldman SR, et al. Among authors: nickels be. Science. 2009 May 15;324(5929):927-8. doi: 10.1126/science.1169237. Science. 2009. PMID: 19443781 Free PMC article.

7

Utilization of variably spaced promoter-like elements by the bacterial RNA polymerase holoenzyme during early elongation.

Devi PG, Campbell EA, Darst SA, Nickels BE. Devi PG, et al. Among authors: nickels be. Mol Microbiol. 2010 Feb;75(3):607-22. doi: 10.1111/j.1365-2958.2009.07021.x. Epub 2010 Jan 12. Mol Microbiol. 2010. PMID: 20070531 Free PMC article.

8

NanoRNAs prime transcription initiation in vivo.

Goldman SR, Sharp JS, Vvedenskaya IO, Livny J, Dove SL, Nickels BE. Goldman SR, et al. Among authors: nickels be. Mol Cell. 2011 Jun 24;42(6):817-25. doi: 10.1016/j.molcel.2011.06.005. Mol Cell. 2011. PMID: 21700226 Free PMC article.

9

A novel phage-encoded transcription antiterminator acts by suppressing bacterial RNA polymerase pausing.

Berdygulova Z, Esyunina D, Miropolskaya N, Mukhamedyarov D, Kuznedelov K, Nickels BE, Severinov K, Kulbachinskiy A, Minakhin L. Berdygulova Z, et al. Among authors: nickels be. Nucleic Acids Res. 2012 May;40(9):4052-63. doi: 10.1093/nar/gkr1285. Epub 2012 Jan 11. Nucleic Acids Res. 2012. PMID: 22238378 Free PMC article.

10

Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs.

Vvedenskaya IO, Sharp JS, Goldman SR, Kanabar PN, Livny J, Dove SL, Nickels BE. Vvedenskaya IO, et al. Among authors: nickels be. Genes Dev. 2012 Jul 1;26(13):1498-507. doi: 10.1101/gad.192732.112. Genes Dev. 2012. PMID: 22751503 Free PMC article.

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