Hayer K - Search Results

1

IVT-seq reveals extreme bias in RNA sequencing.

Lahens NF, Kavakli IH, Zhang R, Hayer K, Black MB, Dueck H, Pizarro A, Kim J, Irizarry R, Thomas RS, Grant GR, Hogenesch JB. Lahens NF, et al. Among authors: hayer k. Genome Biol. 2014 Jun 30;15(6):R86. doi: 10.1186/gb-2014-15-6-r86. Genome Biol. 2014. PMID: 24981968 Free PMC article.

2

Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data.

Hayer KE, Pizarro A, Lahens NF, Hogenesch JB, Grant GR. Hayer KE, et al. Bioinformatics. 2015 Dec 15;31(24):3938-45. doi: 10.1093/bioinformatics/btv488. Epub 2015 Sep 3. Bioinformatics. 2015. PMID: 26338770 Free PMC article.

3

CircaDB: a database of mammalian circadian gene expression profiles.

Pizarro A, Hayer K, Lahens NF, Hogenesch JB. Pizarro A, et al. Among authors: hayer k. Nucleic Acids Res. 2013 Jan;41(Database issue):D1009-13. doi: 10.1093/nar/gks1161. Epub 2012 Nov 24. Nucleic Acids Res. 2013. PMID: 23180795 Free PMC article.

4

A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression.

Lahens NF, Ricciotti E, Smirnova O, Toorens E, Kim EJ, Baruzzo G, Hayer KE, Ganguly T, Schug J, Grant GR. Lahens NF, et al. BMC Genomics. 2017 Aug 10;18(1):602. doi: 10.1186/s12864-017-4011-0. BMC Genomics. 2017. PMID: 28797240 Free PMC article.

5

Simulation-based comprehensive benchmarking of RNA-seq aligners.

Baruzzo G, Hayer KE, Kim EJ, Di Camillo B, FitzGerald GA, Grant GR. Baruzzo G, et al. Nat Methods. 2017 Feb;14(2):135-139. doi: 10.1038/nmeth.4106. Epub 2016 Dec 12. Nat Methods. 2017. PMID: 27941783 Free PMC article.

6

Zebrafish foxc1a drives appendage-specific neural circuit development.

Banerjee S, Hayer K, Hogenesch JB, Granato M. Banerjee S, et al. Among authors: hayer k. Development. 2015 Feb 15;142(4):753-62. doi: 10.1242/dev.115816. Development. 2015. PMID: 25670796 Free PMC article.

7

A genome-wide screen identifies PAPP-AA-mediated IGFR signaling as a novel regulator of habituation learning.

Wolman MA, Jain RA, Marsden KC, Bell H, Skinner J, Hayer KE, Hogenesch JB, Granato M. Wolman MA, et al. Neuron. 2015 Mar 18;85(6):1200-11. doi: 10.1016/j.neuron.2015.02.025. Epub 2015 Mar 5. Neuron. 2015. PMID: 25754827 Free PMC article.

8

Direct long-read RNA sequencing identifies a subset of questionable exitrons likely arising from reverse transcription artifacts.

Schulz L, Torres-Diz M, Cortés-López M, Hayer KE, Asnani M, Tasian SK, Barash Y, Sotillo E, Zarnack K, König J, Thomas-Tikhonenko A. Schulz L, et al. Among authors: hayer ke. Genome Biol. 2021 Jun 28;22(1):190. doi: 10.1186/s13059-021-02411-1. Genome Biol. 2021. PMID: 34183059 Free PMC article.

9

duper is a null mutation of Cryptochrome 1 in Syrian hamsters.

Lee YY, Cal-Kayitmazbatir S, Francey LJ, Bahiru MS, Hayer KE, Wu G, Zeller MJ, Roberts R, Speers J, Koshalek J, Berres ME, Bittman EL, Hogenesch JB. Lee YY, et al. Proc Natl Acad Sci U S A. 2022 May 3;119(18):e2123560119. doi: 10.1073/pnas.2123560119. Epub 2022 Apr 26. Proc Natl Acad Sci U S A. 2022. PMID: 35471909 Free PMC article.

10

DRUMMER-rapid detection of RNA modifications through comparative nanopore sequencing.

Abebe JS, Price AM, Hayer KE, Mohr I, Weitzman MD, Wilson AC, Depledge DP. Abebe JS, et al. Bioinformatics. 2022 May 26;38(11):3113-3115. doi: 10.1093/bioinformatics/btac274. Bioinformatics. 2022. PMID: 35426900 Free PMC article.

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