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A standardized framing for reporting protein identifications in mzIdentML 1.2.
Seymour SL, Farrah T, Binz PA, Chalkley RJ, Cottrell JS, Searle BC, Tabb DL, Vizcaíno JA, Prieto G, Uszkoreit J, Eisenacher M, Martínez-Bartolomé S, Ghali F, Jones AR. Seymour SL, et al. Among authors: cottrell js. Proteomics. 2014 Nov;14(21-22):2389-99. doi: 10.1002/pmic.201400080. Epub 2014 Sep 23. Proteomics. 2014. PMID: 25092112 Free PMC article.
Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).
Eisenacher M, Martens L, Hardt T, Kohl M, Barsnes H, Helsens K, Häkkinen J, Levander F, Aebersold R, Vandekerckhove J, Dunn MJ, Lisacek F, Siepen JA, Hubbard SJ, Binz PA, Blüggel M, Thiele H, Cottrell J, Meyer HE, Apweiler R, Stephan C. Eisenacher M, et al. Proteomics. 2009 Aug;9(15):3928-33. doi: 10.1002/pmic.200900247. Proteomics. 2009. PMID: 19637238
The PSI-MOD community standard for representation of protein modification data.
Montecchi-Palazzi L, Beavis R, Binz PA, Chalkley RJ, Cottrell J, Creasy D, Shofstahl J, Seymour SL, Garavelli JS. Montecchi-Palazzi L, et al. Among authors: cottrell j. Nat Biotechnol. 2008 Aug;26(8):864-6. doi: 10.1038/nbt0808-864. Nat Biotechnol. 2008. PMID: 18688235 No abstract available.
Protein identification using MS/MS data.
Cottrell JS. Cottrell JS. J Proteomics. 2011 Sep 6;74(10):1842-51. doi: 10.1016/j.jprot.2011.05.014. Epub 2011 May 15. J Proteomics. 2011. PMID: 21635977 Free article.
Hierarchical clustering of shotgun proteomics data.
Koskinen VR, Emery PA, Creasy DM, Cottrell JS. Koskinen VR, et al. Among authors: cottrell js. Mol Cell Proteomics. 2011 Jun;10(6):M110.003822. doi: 10.1074/mcp.M110.003822. Epub 2011 Mar 29. Mol Cell Proteomics. 2011. PMID: 21447708 Free PMC article.
29 results