Das R - Search Results

1

Blind predictions of DNA and RNA tweezers experiments with force and torque.

Chou FC, Lipfert J, Das R. Chou FC, et al. Among authors: das r. PLoS Comput Biol. 2014 Aug 7;10(8):e1003756. doi: 10.1371/journal.pcbi.1003756. eCollection 2014 Aug. PLoS Comput Biol. 2014. PMID: 25102226 Free PMC article.

2

Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae.

Lipfert J, Das R, Chu VB, Kudaravalli M, Boyd N, Herschlag D, Doniach S. Lipfert J, et al. Among authors: das r. J Mol Biol. 2007 Feb 2;365(5):1393-406. doi: 10.1016/j.jmb.2006.10.022. Epub 2006 Oct 13. J Mol Biol. 2007. PMID: 17118400 Free PMC article.

3

A mutate-and-map strategy for inferring base pairs in structured nucleic acids: proof of concept on a DNA/RNA helix.

Kladwang W, Das R. Kladwang W, et al. Among authors: das r. Biochemistry. 2010 Sep 7;49(35):7414-6. doi: 10.1021/bi101123g. Biochemistry. 2010. PMID: 20677780

4

A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA.

Kladwang W, Cordero P, Das R. Kladwang W, et al. Among authors: das r. RNA. 2011 Mar;17(3):522-34. doi: 10.1261/rna.2516311. Epub 2011 Jan 14. RNA. 2011. PMID: 21239468 Free PMC article.

5

A two-dimensional mutate-and-map strategy for non-coding RNA structure.

Kladwang W, VanLang CC, Cordero P, Das R. Kladwang W, et al. Among authors: das r. Nat Chem. 2011 Oct 30;3(12):954-62. doi: 10.1038/nchem.1176. Nat Chem. 2011. PMID: 22109276 Free PMC article.

6

Automated RNA structure prediction uncovers a kink-turn linker in double glycine riboswitches.

Kladwang W, Chou FC, Das R. Kladwang W, et al. Among authors: das r. J Am Chem Soc. 2012 Jan 25;134(3):1404-7. doi: 10.1021/ja2093508. Epub 2012 Jan 12. J Am Chem Soc. 2012. PMID: 22192063

7

An RNA Mapping DataBase for curating RNA structure mapping experiments.

Cordero P, Lucks JB, Das R. Cordero P, et al. Among authors: das r. Bioinformatics. 2012 Nov 15;28(22):3006-8. doi: 10.1093/bioinformatics/bts554. Epub 2012 Sep 12. Bioinformatics. 2012. PMID: 22976082 Free PMC article.

8

Correcting pervasive errors in RNA crystallography through enumerative structure prediction.

Chou FC, Sripakdeevong P, Dibrov SM, Hermann T, Das R. Chou FC, et al. Among authors: das r. Nat Methods. 2013 Jan;10(1):74-6. doi: 10.1038/nmeth.2262. Epub 2012 Dec 2. Nat Methods. 2013. PMID: 23202432 Free PMC article.

9

Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE).

Lyskov S, Chou FC, Conchúir SÓ, Der BS, Drew K, Kuroda D, Xu J, Weitzner BD, Renfrew PD, Sripakdeevong P, Borgo B, Havranek JJ, Kuhlman B, Kortemme T, Bonneau R, Gray JJ, Das R. Lyskov S, et al. Among authors: das r. PLoS One. 2013 May 22;8(5):e63906. doi: 10.1371/journal.pone.0063906. Print 2013. PLoS One. 2013. PMID: 23717507 Free PMC article.

10

Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design.

Drew K, Renfrew PD, Craven TW, Butterfoss GL, Chou FC, Lyskov S, Bullock BN, Watkins A, Labonte JW, Pacella M, Kilambi KP, Leaver-Fay A, Kuhlman B, Gray JJ, Bradley P, Kirshenbaum K, Arora PS, Das R, Bonneau R. Drew K, et al. Among authors: das r. PLoS One. 2013 Jul 15;8(7):e67051. doi: 10.1371/journal.pone.0067051. Print 2013. PLoS One. 2013. PMID: 23869206 Free PMC article.

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